New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4837267	51 (0.970)	4 (0.080)	4/240	NT	7.2%	coding (1229/1425 nt)	ccoN‑I	cbb3‑type cytochrome c oxidase subunit 1
	?	NC_002947	= 4837288	54 (1.050)					coding (1250/1425 nt)	ccoN‑I	cbb3‑type cytochrome c oxidase subunit 1

CGCTGTACCACACCATCCCCAAAGTGTTCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGATGGCCTGGAACACCTGGCGCACCGTGC  >  NC_002947/4837120‑4837416                                                                                                                                                    |                                                                                                                                                      cgcTGTACCACACCATCCCCAAAGTGTTCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGgc                                                                                                                                                     <  2:1253840/150‑1 (MQ=255)      tACCACACCATCCCCAAAGTGTTCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGcgcgcg                                                                                                                                                <  2:454730/150‑1 (MQ=255)         cacaCCATCCCCAAAGTGTTCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTc                                                                                                                                             <  2:842789/150‑1 (MQ=255)         cacaCCATCCCCAAAGTGTTCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTc                                                                                                                                             >  2:1326210/1‑150 (MQ=255)                   ccAAAGTGTTCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACg                                                                                                                                   <  2:1161737/150‑1 (MQ=255)                            tCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCa                                                                                                                          <  1:1241541/150‑1 (MQ=255)                             cGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCAc                                                                                                                         >  1:1134542/1‑150 (MQ=255)                             cGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCAc                                                                                                                         <  2:335756/150‑1 (MQ=255)                              ggCAAAGAACGCATGTACAGCCTCAGCCTGATAAATGCGCAATTGTGGCGCACCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCAcc                                                                                                                        >  1:536488/1‑150 (MQ=21)                                   aGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTTGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACtc                                                                                                                   <  2:187283/150‑1 (MQ=255)                                    gAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCAACATCGGTACCGTGCTGTACATCGCCTCGATGTGGCTCGACGGCATCGCCCAAGGCCTTATGTGTCGCGCGGTCAACAGCGACGGCACGCTCACCTACtcg                                                                                                                  <  1:1097683/150‑1 (MQ=18)                                       cGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGCTGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTGATTATCGACGGCACGCTCACCTACtcgttc                                                                                                               >  1:361933/1‑150 (MQ=18)                                       cGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCTCGCGGTCAACAGCGACGGCACGCTCACCTACtcgttc                                                                                                               <  2:649405/150‑1 (MQ=255)                                        gCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGAc                                                                                                                                    <  1:936368/128‑1 (MQ=255)                                        gCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGAc                                                                                                                                    >  2:936368/1‑128 (MQ=255)                                         cATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACtcgttcgt                                                                                                             >  1:48179/1‑150 (MQ=255)                                          aTGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTg                                                                                                            >  1:1076201/1‑150 (MQ=255)                                          aTGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTg                                                                                                            <  1:586105/150‑1 (MQ=255)                                                   cTCAGCCTGATCAATGCGCACTTCTCGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTtg                                                                                                   <  1:1217983/150‑1 (MQ=255)                                                    tCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTtgg                                                                                                  <  2:1134542/150‑1 (MQ=255)                                                     cGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTtggt                                                                                                 <  1:1256162/150‑1 (MQ=255)                                                          tGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGgcca                                                                                            <  2:1034910/150‑1 (MQ=255)                                                          tGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGgcca                                                                                            <  1:756807/150‑1 (MQ=255)                                                          tGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGgcca                                                                                            <  1:1326210/150‑1 (MQ=255)                                                              cAATGCGCACTTCTGGCTGGCCCCAAACCAATACGTGCGGTTCATCTCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGgccagcca                                                                                        <  1:672299/150‑1 (MQ=25)                                                                aTGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTTGTGGCCAGCCAcc                                                                                      >  1:105685/1‑150 (MQ=255)                                                                        ttCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGccgtcgctgttgaccgcgcgccacat                                                                                                                             >  1:1277109‑M1/1‑77 (MQ=255)                                                                        ttCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGccgtcgctgttgaccgcgcgccacat                                                                                                                             <  2:1277109‑M1/103‑27 (MQ=255)                                                                         tCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGccgtcgctgttgaccgcgcgccacatca                                                                                                                           <  1:118823‑M1/104‑29 (MQ=255)                                                                         tCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGccgtcgctgttgaccgcgcgccacatca                                                                                                                           >  2:118823‑M1/1‑76 (MQ=255)                                                                            ggctggcCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTtcgtcg                                                                          >  1:1194966/1‑150 (MQ=255)                                                                             gctggcCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTTACCGGCAGCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCATGGAAACCTTGGTGGCCAGCCACCCAGGCTTcgtcgt                                                                         <  1:1155692/150‑1 (MQ=255)                                                                               tggcCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTgc                                                                       >  2:472677/1‑150 (MQ=255)                                                                                   caccaTCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCtt                                                                   >  1:274667/1‑150 (MQ=255)                                                                                   caccaTCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCtt                                                                   >  1:132399/1‑150 (MQ=255)                                                                                           gTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTTGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTgc                                                                       <  1:1088166/138‑1 (MQ=255)                                                                                           gTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTTGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTgc                                                                       >  2:1088166/1‑138 (MQ=255)                                                                                              ccGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGgcggcg                                                        >  1:1254160/1‑150 (MQ=255)                                                                                                     gTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCtt                                                 >  1:285557/1‑150 (MQ=255)                                                                                                      tACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTg                                                                                                            >  2:720410/1‑90 (MQ=255)                                                                                                      tACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTg                                                                                                            <  1:720410/90‑1 (MQ=255)                                                                                                          tCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAgg                                                                                  <  2:1421885/112‑1 (MQ=255)                                                                                                          tCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAgg                                                                                  >  1:1421885/1‑112 (MQ=255)                                                                                                                  aTGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTGGGTGGCTGGCCAccaag                                                                                   >  2:1049611/1‑100 (MQ=25)                                                                                                                  aTGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTGGGTGGCTGGCCACCAAg                                                                                   <  1:1049611/103‑1 (MQ=25)                                                                                                                     tgGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGgcca                                                                                            <  2:60612/91‑1 (MQ=255)                                                                                                                     tgGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGgcca                                                                                            >  1:60612/1‑91 (MQ=255)                                                                                                                        gTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCAccc                                                                                     >  1:477178/1‑95 (MQ=255)                                                                                                                        gTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCAccc                                                                                     <  2:477178/95‑1 (MQ=255)                                                                                                                        gTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAgg                                                                                  >  2:1319391/1‑98 (MQ=255)                                                                                                                        gTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAgg                                                                                  <  1:1319391/98‑1 (MQ=255)                                                                                                                         tCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGa                             <  2:536488/150‑1 (MQ=255)                                                                                                                                cATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTtcgtc                                                               >  1:905838/1‑109 (MQ=255)                                                                                                                                cATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTtcgtc                                                               <  2:905838/109‑1 (MQ=255)                                                                                                                                         gggCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGATGGCCTGGAACACCTg             <  2:48179/150‑1 (MQ=255)                                                                                                                                              tGATGTGGCGCGCGGTCAACAGCGACGGcacatcaggccctgggcgatgccgttgacccacatcgaggcgatgtacagcacggtaccgatggtggccagccaga                                                      <  1:118823‑M2/104‑77 (MQ=255)                                                                                                                                              tGATGTGGCGCGCGGTCAACAGCGACGGcacatcaggccctgggcgatgccgttgacccacatcgaggcgatgtacagcacggtaccgatggtggccagccaga                                                      >  2:118823‑M2/1‑28 (MQ=255)                                                                                                                                              tGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACACAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGATGGCCTGGAACACCTGGCGCa        >  2:475081/1‑150 (MQ=255)                                                                                                                                                aTGTGGCGCGCGGTCAACAGCGACGGcacatcaggccctgggcgatgccgttgacccacatcgaggcgatgtacagcacggtaccgatggtggccagccagaa                                                     <  2:1277109‑M2/103‑78 (MQ=255)                                                                                                                                                aTGTGGCGCGCGGTCAACAGCGACGGcacatcaggccctgggcgatgccgttgacccacatcgaggcgatgtacagcacggtaccgatggtggccagccagaa                                                     >  1:1277109‑M2/1‑26 (MQ=255)                                                                                                                                                aTGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGATGGCCTGGAACACCTGGCGCAcc      <  1:854651/150‑1 (MQ=255)                                                                                                                                                    ggCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGATGGCCTGGAACACCTGGCGCACCGTGc  <  1:472677/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CGCTGTACCACACCATCCCCAAAGTGTTCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGATGGCCTGGAACACCTGGCGCACCGTGC  >  NC_002947/4837120‑4837416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.