New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4837267	51 (0.970)	4 (0.080)	4/240	NT	7.2%	coding (1229/1425 nt)	ccoN‑I	cbb3‑type cytochrome c oxidase subunit 1
	?	NC_002947	= 4837288	54 (1.050)					coding (1250/1425 nt)	ccoN‑I	cbb3‑type cytochrome c oxidase subunit 1

TCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGATGGCCTGGAACACCTGGCGCACCGTGCGTTCGCCAGCG  >  NC_002947/4837147‑4837427                                                                                                                                              |                                                                                                                                            tCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCa                                                                                                                                     <  1:1241541/150‑1 (MQ=255)  cGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCAc                                                                                                                                    >  1:1134542/1‑150 (MQ=255)  cGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCAc                                                                                                                                    <  2:335756/150‑1 (MQ=255)   ggCAAAGAACGCATGTACAGCCTCAGCCTGATAAATGCGCAATTGTGGCGCACCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCAcc                                                                                                                                   >  1:536488/1‑150 (MQ=21)        aGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTTGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACtc                                                                                                                              <  2:187283/150‑1 (MQ=255)         gAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCAACATCGGTACCGTGCTGTACATCGCCTCGATGTGGCTCGACGGCATCGCCCAAGGCCTTATGTGTCGCGCGGTCAACAGCGACGGCACGCTCACCTACtcg                                                                                                                             <  1:1097683/150‑1 (MQ=18)            cGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGCTGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTGATTATCGACGGCACGCTCACCTACtcgttc                                                                                                                          >  1:361933/1‑150 (MQ=18)            cGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCTCGCGGTCAACAGCGACGGCACGCTCACCTACtcgttc                                                                                                                          <  2:649405/150‑1 (MQ=255)              cATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACtcgttcgt                                                                                                                        >  1:48179/1‑150 (MQ=255)               aTGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTg                                                                                                                       >  1:1076201/1‑150 (MQ=255)               aTGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTg                                                                                                                       <  1:586105/150‑1 (MQ=255)                        cTCAGCCTGATCAATGCGCACTTCTCGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTtg                                                                                                              <  1:1217983/150‑1 (MQ=255)                         tCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTtgg                                                                                                             <  2:1134542/150‑1 (MQ=255)                          cGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTtggt                                                                                                            <  1:1256162/150‑1 (MQ=255)                               tGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGgcca                                                                                                       <  1:1326210/150‑1 (MQ=255)                               tGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGgcca                                                                                                       <  2:1034910/150‑1 (MQ=255)                               tGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGgcca                                                                                                       <  1:756807/150‑1 (MQ=255)                                   cAATGCGCACTTCTGGCTGGCCCCAAACCAATACGTGCGGTTCATCTCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGgccagcca                                                                                                   <  1:672299/150‑1 (MQ=25)                                     aTGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTTGTGGCCAGCCAcc                                                                                                 >  1:105685/1‑150 (MQ=255)                                                 ggctggcCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTtcgtcg                                                                                     >  1:1194966/1‑150 (MQ=255)                                                  gctggcCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTTACCGGCAGCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCATGGAAACCTTGGTGGCCAGCCACCCAGGCTTcgtcgt                                                                                    <  1:1155692/150‑1 (MQ=255)                                                    tggcCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTgc                                                                                  >  2:472677/1‑150 (MQ=255)                                                        caccaTCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCtt                                                                              >  1:274667/1‑150 (MQ=255)                                                        caccaTCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCtt                                                                              >  1:132399/1‑150 (MQ=255)                                                                gTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTTGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTgc                                                                                  <  1:1088166/138‑1 (MQ=255)                                                                gTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTTGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTgc                                                                                  >  2:1088166/1‑138 (MQ=255)                                                                   ccGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGgcggcg                                                                   >  1:1254160/1‑150 (MQ=255)                                                                          gTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCtt                                                            >  1:285557/1‑150 (MQ=255)                                                                           tACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTg                                                                                                                       >  2:720410/1‑90 (MQ=255)                                                                           tACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTg                                                                                                                       <  1:720410/90‑1 (MQ=255)                                                                               tCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAgg                                                                                             <  2:1421885/112‑1 (MQ=255)                                                                               tCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAgg                                                                                             >  1:1421885/1‑112 (MQ=255)                                                                                       aTGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTGGGTGGCTGGCCAccaag                                                                                              >  2:1049611/1‑100 (MQ=25)                                                                                       aTGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTGGGTGGCTGGCCACCAAg                                                                                              <  1:1049611/103‑1 (MQ=25)                                                                                          tgGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGgcca                                                                                                       <  2:60612/91‑1 (MQ=255)                                                                                          tgGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGgcca                                                                                                       >  1:60612/1‑91 (MQ=255)                                                                                             gTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCAccc                                                                                                >  1:477178/1‑95 (MQ=255)                                                                                             gTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCAccc                                                                                                <  2:477178/95‑1 (MQ=255)                                                                                             gTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAgg                                                                                             >  2:1319391/1‑98 (MQ=255)                                                                                             gTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAgg                                                                                             <  1:1319391/98‑1 (MQ=255)                                                                                              tCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGa                                        <  2:536488/150‑1 (MQ=255)                                                                                                     cATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTtcgtc                                                                          >  1:905838/1‑109 (MQ=255)                                                                                                     cATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTtcgtc                                                                          <  2:905838/109‑1 (MQ=255)                                                                                                              gggCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGATGGCCTGGAACACCTg                        <  2:48179/150‑1 (MQ=255)                                                                                                                   tGATGTGGCGCGCGGTCAACAGCGACGGcacatcaggccctgggcgatgccgttgacccacatcgaggcgatgtacagcacggtaccgatggtggccagccaga                                                                 >  2:118823‑M2/1‑28 (MQ=255)                                                                                                                   tGATGTGGCGCGCGGTCAACAGCGACGGcacatcaggccctgggcgatgccgttgacccacatcgaggcgatgtacagcacggtaccgatggtggccagccaga                                                                 <  1:118823‑M2/104‑77 (MQ=255)                                                                                                                   tGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACACAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGATGGCCTGGAACACCTGGCGCa                   >  2:475081/1‑150 (MQ=255)                                                                                                                     aTGTGGCGCGCGGTCAACAGCGACGGcacatcaggccctgggcgatgccgttgacccacatcgaggcgatgtacagcacggtaccgatggtggccagccagaa                                                                <  2:1277109‑M2/103‑78 (MQ=255)                                                                                                                     aTGTGGCGCGCGGTCAACAGCGACGGcacatcaggccctgggcgatgccgttgacccacatcgaggcgatgtacagcacggtaccgatggtggccagccagaa                                                                >  1:1277109‑M2/1‑26 (MQ=255)                                                                                                                     aTGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGATGGCCTGGAACACCTGGCGCAcc                 <  1:854651/150‑1 (MQ=255)                                                                                                                         ggCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGATGGCCTGGAACACCTGGCGCACCGTGc             <  1:472677/150‑1 (MQ=255)                                                                                                                          gcgcgcGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGATGGCCTGGAACACCTGGCGCACCGTGCg            >  2:981468/1‑150 (MQ=255)                                                                                                                             cgcgGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGATGGCCTGGAACACCTGGCGCACCGTGCGTTc         <  2:1254160/150‑1 (MQ=255)                                                                                                                                  tCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGATGGCCTGGAACACCTGGCGCACCGTGCGTTCGCCAg    >  1:133951/1‑150 (MQ=255)                                                                                                                                    aaCAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGATGGCCTGGAACACCTGGCGCACCGTGCGTTCGCCa     >  2:216073/1‑147 (MQ=255)                                                                                                                                    aaCAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGATGGCCTGGAACACCTGGCGCACCGTGCGTTCGCCa     <  1:216073/147‑1 (MQ=255)                                                                                                                                    aaCAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGATGGCCTGGAACACCTGGCGCACCGTGCGTTCGCCAgcg  >  1:646506/1‑150 (MQ=255)                                                                                                                                      cAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGgcca                                                                                                       >  1:1302561/1‑47 (MQ=255)                                                                                                                                      cAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGgcca                                                                                                       <  2:1302561/47‑1 (MQ=255)                                                                                                                                              |                                                                                                                                            TCGGCAAAGAACGCATGTACAGCCTCGGCCTGATCAATGCGCACTTCTGGCTGGCCACCATCGGTACCGTGCTGTACATCGCCTCGATGTGGGTCAACGGCATCGCCCAGGGCCTGATGTGGCGCGCGGTCAACAGCGACGGCACGCTCACCTACTCGTTCGTGGAAACCTTGGTGGCCAGCCACCCAGGCTTCGTCGTGCGCTTCGTCGGCGGCGCGATCTTCCTCAGCGGCATGTTCCTGATGGCCTGGAACACCTGGCGCACCGTGCGTTCGCCAGCG  >  NC_002947/4837147‑4837427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.