New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5080875	40 (0.760)	4 (0.080)	4/234	NT	9.4%	coding (712/1236 nt)	lysC	aspartokinase
	?	NC_002947	= 5080881	39 (0.780)					coding (706/1236 nt)	lysC	aspartokinase

AAGCGCTGATCGGGCCGAGGATCTTGAAGGCCACGCCCGGGGTATCCGGCACGCCGCGAATGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGAAGGTGATCTTCTCCAGGCGACGG  >  NC_002947/5080728‑5081020                                                                                                                                                    |                                                                                                                                                  aaGCGCTGATCGGGCCGAGGATCTTGAAGGCCACGCCCGGGGTATCCGGCACGCCGCGAATGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTAc                                                                                                                                                 <  1:765384/150‑1 (MQ=255)          tCGGGCCGAGGATCTTGAAGGCCACGCCCGGGGTATCCGGCACGCCGCGAATGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGaccct                                                                                                                                        <  2:718426‑M2/150‑6 (MQ=255)            gggCCGAGGATCTTGAAGGCCACGCCCGGGGTATCCGGCACGCCGCGAATGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACcctcc                                                                                                                                      <  1:937300/150‑1 (MQ=255)                               ccACGCCCGGGGTATCCGGCACGCCGCGAATGGTCAGCTTTGCTTCATCCGGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCtt                                                                                                                                    >  1:811942/1‑133 (MQ=255)                               ccACGCCCGGGGTATCCGGCACGCCGCGAATGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCtt                                                                                                                                    <  2:811942/133‑1 (MQ=255)                                                ggCACGCCGCGAATGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTAc                                                                                                  <  2:859948/150‑1 (MQ=255)                                                            aTGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCAGGCCCAGCGGAACGTTGTACTTGCCGGCGAAc                                                                                      >  1:315240/1‑150 (MQ=255)                                                                tCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTAATCAATGGTGTTGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCa                                                                                  <  1:883881/150‑1 (MQ=255)                                                                 cAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCAc                                                                                 >  2:1056422/1‑150 (MQ=255)                                                                          ttCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGAt                                                                        >  1:851598/1‑150 (MQ=255)                                                                          ttCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGAt                                                                        >  1:285298/1‑150 (MQ=255)                                                                             atcaCGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTg                                                                     >  1:102951/1‑150 (MQ=255)                                                                              tcaCGGTTGAAGGCGATACCGGAAATGATCGGCTGTTGCAGGGATCCCTCTTCATCACTGGTAATGAGGGTACTCGGACCGTCCTCTACGCTGTGTAGCACGCCCGGCGGAATGCTGGAATTCCCAACGCACTCCACCGAACGAATCTgc                                                                    >  2:586527/1‑150 (MQ=255)                                                                              tcaCGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTgc                                                                    <  2:285298/150‑1 (MQ=255)                                                                              tcaCGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTATTAATAAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTCTACTTGACGGCGAACTCCACCGAACAGATCTgc                                                                    >  2:630922/1‑150 (MQ=255)                                                                                      gAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCtt                                                            <  2:851598/150‑1 (MQ=255)                                                                                         ggCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGa                                                         <  1:1056422/150‑1 (MQ=255)                                                                                         ggCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGT‑CCGGGtaccctcattaccattgatgaaga                                                                                                                     <  2:1349812‑M2/89‑25 (MQ=255)                                                                                         ggCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGT‑CCGGGtaccctcattaccattgatgaaga                                                                                                                     >  1:1349812‑M2/1‑65 (MQ=255)                                                                                          gCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTCCGGGTaccctcattaccat                                                                                                                               <  1:673068‑M2/79‑15 (MQ=255)                                                                                          gCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTCCGGGTaccctcattaccat                                                                                                                               >  2:673068‑M2/1‑65 (MQ=255)                                                                                                 cGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTCTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCaa                                                    >  2:815354/1‑147 (MQ=255)                                                                                                 cGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTCTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCaa                                                    <  1:815354/147‑1 (MQ=255)                                                                                                          tCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCAttt                                        >  2:1390522/1‑150 (MQ=255)                                                                                                          tCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCAttt                                        >  1:243321/1‑150 (MQ=255)                                                                                                             gCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCa                                     <  2:102951/150‑1 (MQ=255)                                                                                                             cgatctCCATGGATTCCTCTTCATCAATGGTAATGGCGCAATCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCa                                     <  1:74236/145‑1 (MQ=255)                                                                                                              cTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAg                                    <  1:718426/150‑1 (MQ=255)                                                                                                                gTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTg                                               >  2:1134427/1‑137 (MQ=255)                                                                                                                gTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTg                                               <  1:1134427/137‑1 (MQ=255)                                                                                                                      tGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCtt                            <  1:1390522/150‑1 (MQ=255)                                                                                                                           tCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGAAg                       >  2:1237732/1‑150 (MQ=255)                                                                                                                             ctctTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGaa                        >  1:572798/1‑147 (MQ=255)                                                                                                                             ctctTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGaa                        <  2:572798/147‑1 (MQ=255)                                                                                                                             ctctTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGAAGGt                     >  1:1224844/1‑150 (MQ=255)                                                                                                                              tctTCATCAATGGTAATGAGGGTacccggaccctcattaccattgatgaagaggaatccatggaacagccgatcatttccggtatcgcc                                                                                 >  1:1349812‑M1/1‑23 (MQ=255)                                                                                                                              tctTCATCAATGGTAATGAGGGTacccggaccctcattaccattgatgaagaggaatccatggaacagccgatcatttccggtatcgcc                                                                                 <  2:1349812‑M1/89‑67 (MQ=255)                                                                                                                              tctTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCa                                     >  1:196461/1‑133 (MQ=255)                                                                                                                              tctTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCa                                     <  2:196461/133‑1 (MQ=255)                                                                                                                                    tcaATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCCACCGGAGCGATAAGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGAAGGTGAtcttc              >  2:1416676/1‑150 (MQ=255)                                                                                                                                    tcaATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGAAGGTGAtcttc              >  1:950625/1‑150 (MQ=255)                                                                                                                                       aTGGTAATGAGGGTacccggaccctcattaccattgatgaagaggaatccatggaacagccgatcatttccggtatcgc                                                                                  >  2:673068‑M1/1‑14 (MQ=255)                                                                                                                                       aTGGTAATGAGGGTacccggaccctcattaccattgatgaagaggaatccatggaacagccgatcatttccggtatcgc                                                                                  <  1:673068‑M1/79‑66 (MQ=255)                                                                                                                                           tAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTc                                       >  2:1075927/1‑118 (MQ=255)                                                                                                                                           tAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTc                                       >  2:1075745/1‑118 (MQ=255)                                                                                                                                           tAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTc                                       <  1:1075927/118‑1 (MQ=255)                                                                                                                                           tAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTc                                       <  1:1075745/118‑1 (MQ=255)                                                                                                                                           tAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCCTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGAAGGTGATCTTCTCCAGGc       >  2:310667/1‑150 (MQ=255)                                                                                                                                             aTGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGAAGGTGATCTTCTCCAGGCGa     >  2:957397/1‑150 (MQ=255)                                                                                                                                               gAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGAAGGTGATCTTCTCCAGGCGACg   <  1:630922/150‑1 (MQ=255)                                                                                                                                                aGGGTccgggtaccctcattaccattgatgaagaggaatccatggaacagccgatcatttccggtatcgccttcaaccgtgatgaagcaaagctgaccattcgcggcgtgccggataccccgggcgtggccttcaagatcctcggcccga  <  2:718426‑M1/150‑146 (MQ=255)                                                                                                                                                aGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTgc                                                                    >  2:397400/1‑84 (MQ=255)                                                                                                                                                aGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTgc                                                                    <  1:397400/84‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  AAGCGCTGATCGGGCCGAGGATCTTGAAGGCCACGCCCGGGGTATCCGGCACGCCGCGAATGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGAAGGTGATCTTCTCCAGGCGACGG  >  NC_002947/5080728‑5081020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.