New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5080875	40 (0.760)	4 (0.080)	4/234	NT	9.4%	coding (712/1236 nt)	lysC	aspartokinase
	?	NC_002947	= 5080881	39 (0.780)					coding (706/1236 nt)	lysC	aspartokinase

TCGGGCCGAGGATCTTGAAGGCCACGCCCGGGGTATCCGGCACGCCGCGAATGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGAAGGTGATCTTCTCCAGGCGACGGGCCTGTG  >  NC_002947/5080737‑5081027                                                                                                                                                 |                                                                                                                                                   tCGGGCCGAGGATCTTGAAGGCCACGCCCGGGGTATCCGGCACGCCGCGAATGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGaccct                                                                                                                                               <  2:718426‑M2/150‑6 (MQ=255)   gggCCGAGGATCTTGAAGGCCACGCCCGGGGTATCCGGCACGCCGCGAATGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACcctcc                                                                                                                                             <  1:937300/150‑1 (MQ=255)                      ccACGCCCGGGGTATCCGGCACGCCGCGAATGGTCAGCTTTGCTTCATCCGGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCtt                                                                                                                                           >  1:811942/1‑133 (MQ=255)                      ccACGCCCGGGGTATCCGGCACGCCGCGAATGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCtt                                                                                                                                           <  2:811942/133‑1 (MQ=255)                                       ggCACGCCGCGAATGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTAc                                                                                                         <  2:859948/150‑1 (MQ=255)                                                   aTGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCAGGCCCAGCGGAACGTTGTACTTGCCGGCGAAc                                                                                             >  1:315240/1‑150 (MQ=255)                                                       tCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTAATCAATGGTGTTGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCa                                                                                         <  1:883881/150‑1 (MQ=255)                                                        cAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCAc                                                                                        >  2:1056422/1‑150 (MQ=255)                                                                 ttCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGAt                                                                               >  1:851598/1‑150 (MQ=255)                                                                 ttCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGAt                                                                               >  1:285298/1‑150 (MQ=255)                                                                    atcaCGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTg                                                                            >  1:102951/1‑150 (MQ=255)                                                                     tcaCGGTTGAAGGCGATACCGGAAATGATCGGCTGTTGCAGGGATCCCTCTTCATCACTGGTAATGAGGGTACTCGGACCGTCCTCTACGCTGTGTAGCACGCCCGGCGGAATGCTGGAATTCCCAACGCACTCCACCGAACGAATCTgc                                                                           >  2:586527/1‑150 (MQ=255)                                                                     tcaCGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTgc                                                                           <  2:285298/150‑1 (MQ=255)                                                                     tcaCGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTATTAATAAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTCTACTTGACGGCGAACTCCACCGAACAGATCTgc                                                                           >  2:630922/1‑150 (MQ=255)                                                                             gAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCtt                                                                   <  2:851598/150‑1 (MQ=255)                                                                                ggCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGa                                                                <  1:1056422/150‑1 (MQ=255)                                                                                ggCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGT‑CCGGGtaccctcattaccattgatgaaga                                                                                                                            <  2:1349812‑M2/89‑25 (MQ=255)                                                                                ggCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGT‑CCGGGtaccctcattaccattgatgaaga                                                                                                                            >  1:1349812‑M2/1‑65 (MQ=255)                                                                                 gCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTCCGGGTaccctcattaccat                                                                                                                                      <  1:673068‑M2/79‑15 (MQ=255)                                                                                 gCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTCCGGGTaccctcattaccat                                                                                                                                      >  2:673068‑M2/1‑65 (MQ=255)                                                                                        cGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTCTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCaa                                                           <  1:815354/147‑1 (MQ=255)                                                                                        cGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTCTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCaa                                                           >  2:815354/1‑147 (MQ=255)                                                                                                 tCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCAttt                                               >  2:1390522/1‑150 (MQ=255)                                                                                                 tCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCAttt                                               >  1:243321/1‑150 (MQ=255)                                                                                                    gCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCa                                            <  2:102951/150‑1 (MQ=255)                                                                                                    cgatctCCATGGATTCCTCTTCATCAATGGTAATGGCGCAATCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCa                                            <  1:74236/145‑1 (MQ=255)                                                                                                     cTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAg                                           <  1:718426/150‑1 (MQ=255)                                                                                                       gTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTg                                                      <  1:1134427/137‑1 (MQ=255)                                                                                                       gTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTg                                                      >  2:1134427/1‑137 (MQ=255)                                                                                                             tGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCtt                                   <  1:1390522/150‑1 (MQ=255)                                                                                                                  tCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGAAg                              >  2:1237732/1‑150 (MQ=255)                                                                                                                    ctctTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGaa                               >  1:572798/1‑147 (MQ=255)                                                                                                                    ctctTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGaa                               <  2:572798/147‑1 (MQ=255)                                                                                                                    ctctTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGAAGGt                            >  1:1224844/1‑150 (MQ=255)                                                                                                                     tctTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCa                                            <  2:196461/133‑1 (MQ=255)                                                                                                                     tctTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCa                                            >  1:196461/1‑133 (MQ=255)                                                                                                                           tcaATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCCACCGGAGCGATAAGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGAAGGTGAtcttc                     >  2:1416676/1‑150 (MQ=255)                                                                                                                           tcaATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGAAGGTGAtcttc                     >  1:950625/1‑150 (MQ=255)                                                                                                                                  tAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTc                                              <  1:1075745/118‑1 (MQ=255)                                                                                                                                  tAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTc                                              <  1:1075927/118‑1 (MQ=255)                                                                                                                                  tAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTc                                              >  2:1075927/1‑118 (MQ=255)                                                                                                                                  tAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTc                                              >  2:1075745/1‑118 (MQ=255)                                                                                                                                  tAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCCTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGAAGGTGATCTTCTCCAGGc              >  2:310667/1‑150 (MQ=255)                                                                                                                                    aTGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGAAGGTGATCTTCTCCAGGCGa            >  2:957397/1‑150 (MQ=255)                                                                                                                                      gAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGAAGGTGATCTTCTCCAGGCGACg          <  1:630922/150‑1 (MQ=255)                                                                                                                                       aGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTgc                                                                           <  1:397400/84‑1 (MQ=255)                                                                                                                                       aGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTgc                                                                           >  2:397400/1‑84 (MQ=255)                                                                                                                                              ccGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGAAGGTGATCTTCTCCAGGCGACGGGCCtgtg  >  2:753740/1‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                                   TCGGGCCGAGGATCTTGAAGGCCACGCCCGGGGTATCCGGCACGCCGCGAATGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCAATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCAGCGGAACGTTGTACTTGCCGGCGAACTCCACCGAACGGATCTGCAGCACCTTGGAACCAAGGCTGGCCATTTCCAGCATCTCTTCGAAGGTGATCTTCTCCAGGCGACGGGCCTGTG  >  NC_002947/5080737‑5081027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.