New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5189284 =	44 (0.840)	4 (0.080)	4/234	NT	8.6%	coding (70/294 nt)	PP_4569	hypothetical protein
	?	NC_002947	5189342 =	43 (0.860)					coding (12/294 nt)	PP_4569	hypothetical protein

ATCATGACCGGCTGCTGGCTACCACGCACGACCATGCCCGCGACTGGCGCGATGGCAAAGCGTGTGGTGGAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGC  >  NC_002947/5189136‑5189429                                                                                                                                                     |                                                                                                                                                  gatcagcagccatgtgaagcagttcaaacgtgccaaccccaaggcttaccgcgtgctgcggccggtactggcggtggtggtggcgtatctgttgtatcgctggttgttctgattttttctggtctaaccggcatctttgcggggcaagcc                                                                                                                                                  >  1:1132565‑M1/149‑150 (MQ=255)     agcagccatgtgaagcagttcaaacgtgccaaccccaaggcttaccgcgtgctgcggccggtactggcggtggtggtggcgtatctgttgtatcgctggttgttctgattttttctggtctaaccggcatctttgcggggcaagCCCGCt                                                                                                                                              >  2:974715‑M1/145‑150 (MQ=255)     agcagccatgtgaagcagttcaaacgtgccaaccccaaggcttaccgcgtgctgcggccggtactggcggtggtggtggcgtatctgttgtatcgctggttgttctgatattttctggtctaaccggcatctttgcggggcaagCCCGCt                                                                                                                                              >  1:1356163‑M1/145‑150 (MQ=255)         cGGCTGCTGGCTACCACGCACGACCATGCCCGCGACTGGCGCGATGGCAAAGCGTGTGGTGGAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCa                                                                                                                                          >  2:1125860/1‑150 (MQ=255)         cGGCTGCTGGCTACCACGCACGACCATGCCCGCGACTGGCGCGATGGCAAAGCGTGTGGTGGAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCa                                                                                                                                          <  1:856321/150‑1 (MQ=255)                    tACCACGCACGACCATGCCCGCGACTGGCGCGATGGCAAAGCGTGTGGTGGAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGccc                                                                                                                               <  1:352104/150‑1 (MQ=255)                       ttcaaacgtgccaaccccaaggcttaccgcgtgctgcggccggtactggcggtggtggtggcgtatctgttgtatcgctggttgttctgattttttctggtctaaccggcatctttgcggggcaagCCCGCTTCCACGCGCGCGCCCTCg                                                                                                                            <  2:382372‑M1/24‑1 (MQ=255)                       cacgcacgACCATGCCCGCGACTGGCGCGATGGCAAAGCGTGTGGTGGAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCg                                                                                                                            >  1:1112973/1‑150 (MQ=255)                        acgcacgACCATGCCCGCGACTGGCGCGATGGCAAAGCGTGTGGTGGAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGt                                                                                                                           >  1:1183381/1‑150 (MQ=255)                                ccATGCCCGCGACTGGCGCGATGGCAAAGCGTGTGGTGGAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAg                                                                                                                   <  1:463353/150‑1 (MQ=255)                                       cgcgACTGGCGCGATGGCAAAGCGTGTGGTGGAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGc                                                                                                            <  2:1320643/150‑1 (MQ=255)                                        caaggcttaccgcgtgctgcggccggtactggcggtggtggtggcgtatctgttgtatcgctggttgttctgattttttctggtctaaccggcatctttgcggggcaagCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGcc                                                                                                           <  2:1284526‑M1/41‑1 (MQ=255)                                                cgcgATGGCAAAGCGTGTGGTGGAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCtgt                                                                                                   <  2:994416/150‑1 (MQ=255)                                                      tgctgcggccggtactggcggtggtggtggcgtatctgttgtatcgctggttgttctgattttttctggtctaaccggcatctttgcggggcaagCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGc                                                                                             >  1:382372‑M1/96‑150 (MQ=255)                                                         tgcggccggtactggcggtggtggtggcgtatctgttgtatcgctggttgttctgattttttctggtctaaccggcatctttgcggggcaagCCCGc                                                                                                                                               >  1:1002570‑M1/93‑97 (MQ=255)                                                         tgcggccggtactggcggtggtggtggcgtatctgttgtatcgctggttgttctgattttttctggtctaaccggcatctttgcggggcaagCCCGc                                                                                                                                               <  2:1002570‑M1/5‑1 (MQ=255)                                                         tgcggccggtactggcggtggtggtggcgtatctgttgtatcgctggttgttctgattttttctggtctaaccggcatctttgcggggcaagCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCggg                                                                                          >  1:1284526‑M1/93‑150 (MQ=255)                                                         aaaGCGTGTGGTGGAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCggg                                                                                          >  2:644140/1‑150 (MQ=255)                                                         aaaGCGTGTGGTGGAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAAGGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCggg                                                                                          <  1:24847/150‑1 (MQ=255)                                                            gCGTGTGGTGGAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCtt                                                                                       <  2:1183381/150‑1 (MQ=255)                                                            gCGTGTGGTGGAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCtt                                                                                       <  2:1210284/150‑1 (MQ=255)                                                                   gtggAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCtt                                                                                                                       <  2:718318/111‑1 (MQ=255)                                                                   gtggAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCtt                                                                                                                       >  1:718318/1‑111 (MQ=255)                                                                      gAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCaaa                                                                             >  1:162880/1‑150 (MQ=255)                                                                        aGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGa                                                                           <  2:162880/150‑1 (MQ=255)                                                                         gggATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGAt                                                                          <  1:948718/150‑1 (MQ=255)                                                                             tGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCg                                                                      <  2:487142/150‑1 (MQ=255)                                                                                 gggCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTa                                                                  <  2:523878/150‑1 (MQ=255)                                                                                            gggTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCg                                                                      >  1:250768/1‑135 (MQ=255)                                                                                            gggTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCg                                                                      <  2:250768/135‑1 (MQ=255)                                                                                            gggTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGaaaaa                                                       >  1:182522/1‑150 (MQ=255)                                                                                               tCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGa                                                                <  1:452949/138‑1 (MQ=255)                                                                                               tCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGa                                                                >  2:452949/1‑138 (MQ=255)                                                                                                cTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTgg                                                                                                 >  1:626283/1‑104 (MQ=255)                                                                                                cTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTgg                                                                                                 <  2:626283/104‑1 (MQ=255)                                                                                                 tttGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAg                                                  <  1:1125860/150‑1 (MQ=255)                                                                                                          gTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCa                                                             <  2:887103/130‑1 (MQ=255)                                                                                                          gTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCa                                                             >  1:887103/1‑130 (MQ=255)                                                                                                          gTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAg                                         >  1:226806/1‑150 (MQ=255)                                                                                                             aaTGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGa                                      <  1:644140/150‑1 (MQ=255)                                                                                                               tGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCg                                                                                            <  2:1385758/94‑1 (MQ=255)                                                                                                               tGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCg                                                                                            >  1:1385758/1‑94 (MQ=255)                                                                                                                gTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATac                                   <  1:632638/150‑1 (MQ=255)                                                                                                                 ttCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAg                                                  <  1:1413887/134‑1 (MQ=255)                                                                                                                 ttCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAg                                                  >  2:1413887/1‑134 (MQ=255)                                                                                                                    tGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATacaaca                               <  2:226806/150‑1 (MQ=255)                                                                                                                      gAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGa                                                                                                                 <  1:938620/66‑1 (MQ=255)                                                                                                                      gAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGa                                                                                                                 >  2:938620/1‑66 (MQ=255)                                                                                                                             gCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCtgtg                                                                                                  >  2:597088/1‑74 (MQ=255)                                                                                                                             gCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCtgtg                                                                                                  <  1:597088/74‑1 (MQ=255)                                                                                                                              cGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGccac                     <  2:182522/150‑1 (MQ=255)                                                                                                                                     ttcttcGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCaccaccacc              >  1:77839/1‑150 (MQ=255)                                                                                                                                              gcaCAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTAcc     >  1:656975/1‑150 (MQ=255)                                                                                                                                                 caACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGc  >  1:548015/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                  ATCATGACCGGCTGCTGGCTACCACGCACGACCATGCCCGCGACTGGCGCGATGGCAAAGCGTGTGGTGGAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGC  >  NC_002947/5189136‑5189429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.