New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5189284 =	44 (0.840)	4 (0.080)	4/234	NT	8.6%	coding (70/294 nt)	PP_4569	hypothetical protein
	?	NC_002947	5189342 =	43 (0.860)					coding (12/294 nt)	PP_4569	hypothetical protein

GCGTGTGGTGGAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTGGCACGTTTGAACTGCTTCACATGGCTGCTGATC  >  NC_002947/5189195‑5189489                                                                                                                                                    |                                                                                                                                                    gCGTGTGGTGGAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCtt                                                                                                                                                   <  2:1210284/150‑1 (MQ=255) gCGTGTGGTGGAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCtt                                                                                                                                                   <  2:1183381/150‑1 (MQ=255)           gAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCaaa                                                                                                                                         >  1:162880/1‑150 (MQ=255)             aGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGa                                                                                                                                       <  2:162880/150‑1 (MQ=255)              gggATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGAt                                                                                                                                      <  1:948718/150‑1 (MQ=255)                  tGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCg                                                                                                                                  <  2:487142/150‑1 (MQ=255)                      gggCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTa                                                                                                                              <  2:523878/150‑1 (MQ=255)                                 gggTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCg                                                                                                                                  <  2:250768/135‑1 (MQ=255)                                 gggTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCg                                                                                                                                  >  1:250768/1‑135 (MQ=255)                                 gggTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGaaaaa                                                                                                                   >  1:182522/1‑150 (MQ=255)                                    tCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGa                                                                                                                            >  2:452949/1‑138 (MQ=255)                                    tCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGa                                                                                                                            <  1:452949/138‑1 (MQ=255)                                      tttGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAg                                                                                                              <  1:1125860/150‑1 (MQ=255)                                               gTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCa                                                                                                                         >  1:887103/1‑130 (MQ=255)                                               gTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCa                                                                                                                         <  2:887103/130‑1 (MQ=255)                                               gTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAg                                                                                                     >  1:226806/1‑150 (MQ=255)                                                  aaTGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGa                                                                                                  <  1:644140/150‑1 (MQ=255)                                                     gTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATac                                                                                               <  1:632638/150‑1 (MQ=255)                                                      ttCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAg                                                                                                              >  2:1413887/1‑134 (MQ=255)                                                      ttCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAg                                                                                                              <  1:1413887/134‑1 (MQ=255)                                                         tGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATacaaca                                                                                           <  2:226806/150‑1 (MQ=255)                                                                   cGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGccac                                                                                 <  2:182522/150‑1 (MQ=255)                                                                          ttcttcGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCaccaccacc                                                                          >  1:77839/1‑150 (MQ=255)                                                                                   gcaCAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTAcc                                                                 >  1:656975/1‑150 (MQ=255)                                                                                      caACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGc                                                              >  1:548015/1‑150 (MQ=255)                                                                                          cccgctgccacaggtgcggctgatccttcaaggacgagggcgcgcgcgtggaagcgggCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCgca                                                          >  1:1284526‑M2/59‑150 (MQ=255)                                                                                           CCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCa                                                                                                                         >  2:561683‑M1/1‑86 (MQ=255)                                                                                           CCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCa                                                                                                                         <  1:561683‑M1/86‑1 (MQ=255)                                                                                             gctgccacaggtgcggctgatccttcaaggacgagggcgcgcgcgtggaagcgggCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCgcagca                                                       >  1:382372‑M2/56‑150 (MQ=255)                                                                                                       gcgcgcCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGc                                             >  1:1273898/1‑150 (MQ=255)                                                                                                       gcgcgcCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGc                                             >  2:604317/1‑150 (MQ=255)                                                                                                           ggctgatccttcaaggacgagggcgcgcgcgtggaagcgggCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTg                                         <  2:1284526‑M2/109‑1 (MQ=255)                                                                                                           gcCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTg                                         >  1:708566/1‑150 (MQ=255)                                                                                                                 gTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTg                                   >  1:781317/1‑150 (MQ=255)                                                                                                                    cTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTgtgc                                <  2:656975/150‑4 (MQ=255)                                                                                                                    cTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTGGCa                                >  2:47155/1‑150 (MQ=255)                                                                                                                       gAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTGGCACGt                             <  2:548015/150‑1 (MQ=255)                                                                                                                        aaGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTGGCACGtt                            >  2:1358655/1‑150 (MQ=255)                                                                                                                            cgagggcgcgcgcgtggaagcgggCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTGGCACGTTTGaa                        <  2:382372‑M2/126‑1 (MQ=255)                                                                                                                             tCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGCAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTGGCACGTTTGAAc                       >  1:610409/1‑150 (MQ=255)                                                                                                                             tCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAACAATCCGAACAGCCAGCGATCCAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTGGCACGTTTGAAc                       <  2:1112973/150‑1 (MQ=255)                                                                                                                             tCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTGGCACGTTTGAAc                       >  1:1204336/1‑150 (MQ=255)                                                                                                                             tCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCGTGGGGTTGGCACGTTTGGAc                       >  1:599215/1‑150 (MQ=255)                                                                                                                             tCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCAACATCGTCAATACCGGCCGCAGCACTCGGTAAGCCTTGGGGTTGGCACGTTTGAAc                       <  1:604317/150‑1 (MQ=255)                                                                                                                              cAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTGGCACGTTTGAACt                      >  1:977529/1‑150 (MQ=255)                                                                                                                                 ccGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTGGCACGTTTGAACTGCt                   <  2:610409/150‑1 (MQ=255)                                                                                                                                   gCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTGGCACGTTTGAACTGCTTc                 >  2:401599/1‑150 (MQ=255)                                                                                                                                    cACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTGGCACGTTTGAACTGCTTca                >  1:1189482/1‑150 (MQ=255)                                                                                                                                       cTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATa                                                                                                >  2:1403556/1‑67 (MQ=255)                                                                                                                                       cTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATa                                                                                                <  1:1403556/67‑1 (MQ=255)                                                                                                                                       cTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTGGCACGTTTGCACTGCtcgtcga             <  2:708566/150‑7 (MQ=255)                                                                                                                                            gCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTGGCACGTTTGAACTGCTTCACATGgctg        >  1:857435/1‑150 (MQ=255)                                                                                                                                              agcgggCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAATATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTGGCACGTTTGAACTGCTTCACATGgctgct      >  1:1356163‑M2/7‑150 (MQ=255)                                                                                                                                              agcgggCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTGGCACGTTTGAACTGCTTCACATGgctgct      >  2:974715‑M2/7‑150 (MQ=255)                                                                                                                                               gcgggCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCgca                                                          >  1:1002570‑M2/6‑97 (MQ=255)                                                                                                                                               gcgggCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCgca                                                          <  2:1002570‑M2/92‑1 (MQ=255)                                                                                                                                                  ggCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTGGCACGTTTGAACTGCTTCACATGGCTGCTGATc  >  1:1132565‑M2/3‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GCGTGTGGTGGAAGGGATGGCGGGCATGACAGGGGTCTTTGCAGAAGTGAATGTTCTGGAATATAGCGAGTGATTCTTCGCAGCACAACCCCGCTTCCACGCGCGCGCCCTCGTCCTTGAAGGATCAGCCGCACCTGTGGCAGCGGGCTTGCCCCGCAAAGATGCCGGTTAGACCAGAAAAAATCAGAACAACCAGCGATACAACAGATACGCCACCACCACCGCCAGTACCGGCCGCAGCACGCGGTAAGCCTTGGGGTTGGCACGTTTGAACTGCTTCACATGGCTGCTGATC  >  NC_002947/5189195‑5189489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.