New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6030119 =	41 (0.780)	7 (0.140)	5/228	NT	16.3%	coding (9/261 nt)	PP_5729	hypothetical protein
	?	NC_002947	6030147 =	34 (0.700)					coding (37/261 nt)	PP_5729	hypothetical protein

CTGCGTGCCGGCGATCGCTTTGTAATCCCCGCCGGCTTCAAAGGCACTTGGGAGGTGCTGGAGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGTGCTGCGAACCCTCGCCCACCTGGTCGGCACCCCTTACGCGCCAGCGCTCAAAGACACCATCCGCACCCTTACCGGC  >  NC_002947/6029971‑6030260                                                                                                                                                     |                                                                                                                                              tgcacatttcgttggggccgaccacccgggtgcggccggtaagggtgcggatggtgtctttgagcgctggcgcgtaaggggtgccgaccaggtgggcgagggttcgcagcacttcttcgttggtcatggtgttcttcctgttgaagttgg                                                                                                                                              <  1:769192‑M1/2‑1 (MQ=255) tgcacatttcgttggggccgaccacccgggtgcggccggtaagggtgcggatggtgtctttgagcgctggcgcgtaaggggtgccgaccaggtgggcgagggttcgcagcacttcttcgttggtcatggtgttcttcctgttgaagttgg                                                                                                                                              >  1:1213949‑M1/149‑150 (MQ=255) cTGCGTGCCGGCGATCGCTTTGTAATCCCCGCCGGCTTCAAAGGCACTTGGGAGGTGCTGGAGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAgg                                                                                                                                              <  2:780772/150‑1 (MQ=255)    cGTGCCGGCGATCGCTTTGTAATCCCCGCCGGCTTCAAAGGCACTTGGGAGGTGCTGGAGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATg                                                                                                                                           <  2:829140/150‑1 (MQ=255)    acatttcgttggggccgaccacccgggtgcgtccggtaagggtgcgggtggtgtctttgagcgctggcgcgtaaggggtgacgaccatgtgggcgagggttcgcagcacttcttcgttggtcatggtgttcttcctgttgaagttGGATg                                                                                                                                           <  2:146432‑M1/5‑1 (MQ=255)     gTGCCGGCGATCGCTTTGTAATCCCCGCCGGCTTCAAAGGCACTTGGGAGGTGCTGGAGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATgg                                                                                                                                          <  1:152503/150‑1 (MQ=255)     gTGCCGGCGATCGCTTTGTAATCCCCGCCGGCTTCAAAGGCACTTGGGAGGTGCTGGAGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATgg                                                                                                                                          <  2:347153/150‑1 (MQ=255)       gCCGGCGATCGCTTTGTAATCCCCGCCGGCTTCAAAGGCACTTGGGAGGTGCTGGAGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGcc                                                                                                                                        <  1:809188/150‑1 (MQ=255)                  cgttGTAATCCCCGCCGGCTTCAAAGGCACGTGGGAGGTGCTGGAGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTc                                                                                                                             >  2:560971/3‑150 (MQ=255)                     tGTAATCCCCGCCGGCTTCAAAGGCACTTGGGAGGTGCTGGAGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCggg                                                                                                                          >  2:1213740/1‑150 (MQ=255)                         cccgggtgcggccggtaagggtgcggatggtgtctttgagcgctggcgcgtaaggggtgccgaccaggtgggcgagggttcgcagcacttcttcgttggtcatggtgttcttccttttgaagttGGATGGCCCTGTCCATGTCGGGCCAt                                                                                                                      >  2:335987‑M1/125‑150 (MQ=255)                         aTCCCCGCCGGCTTCAAAGGCACTTGGGAGGTGCTGGAGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCAt                                                                                                                      >  2:826778/1‑150 (MQ=255)                            cccGCCGGCTTCAAAGGCACTTGGGAGGTGCTGGAGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCa                                                                                                                   >  1:768322/1‑150 (MQ=255)                             ccgccgGCTTCAAAGGCACTTGGGAGGTGCTGGAGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCaa                                                                                                                  <  1:406716/150‑1 (MQ=255)                             ccgccgGCTTCAAAGGCACTTGGGAGGTGCTGGAGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGAAGGCCCTGCCCATGTCGGGCCATCCaa                                                                                                                  >  1:332981/1‑150 (MQ=255)                                 cggccggtaagggtgcggatggtgtctttgagcgctggcgcgtaaggggtgccgaccaggtgggcgagggttcgcagcacttcttcgttggtcatggtgttcttcctgttgaagttGGATGGCCCTGCCCATGTCGGGCCAt                                                                                                                      <  2:954775‑M1/26‑1 (MQ=255)                                 cggccggtaagggtgcggatggtgtctttgagcgctggcgcgtaaggggtgccgaccaggtgggcgagggttcgcagcacttcttcgttggtcatggtgttcttcctgttgaagttGGATGGCCCTGCCCATGTCGGGCCAt                                                                                                                      >  1:954775‑M1/117‑142 (MQ=255)                                     ttCAAAGGCACTTGGGAGGTGCTGGAGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACa                                                                                                          <  2:1166417/150‑1 (MQ=255)                                              aCTTGGGAGGTGCTGGAGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGgaagaa                                                                                                   <  2:810750/148‑1 (MQ=255)                                              aCTTGGGAGGTGCTGGAGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTAGGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGgaagaa                                                                                                   >  1:810750/1‑148 (MQ=255)                                                    gAGGTGCTGGAGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAAGCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGa                                                                                           <  2:860483/150‑1 (MQ=255)                                                            ggAGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTTTCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACgaa                                                                                   >  1:102457/1‑150 (MQ=255)                                                             gAGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACgaag                                                                                  <  2:768322/150‑1 (MQ=255)                                                              aGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCAATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACgaaga                                                                                 <  1:866473/150‑1 (MQ=255)                                                               gCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACgaagaa                                                                                <  1:826778/150‑1 (MQ=255)                                                                       gCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGtgctgc                                                                         >  1:245404/1‑149 (MQ=255)                                                                       gCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGtgctgc                                                                         <  2:245404/149‑1 (MQ=255)                                                                             tCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGc                                                                                                                                    <  2:1082394/84‑1 (MQ=255)                                                                             tCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGc                                                                                                                                    >  1:1082394/1‑84 (MQ=255)                                                                                 tgtgATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGTATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGTGCTGCGAACCCTCGcc                                                              >  1:810212/1‑150 (MQ=255)                                                                                    gATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGgaa                                                                                                      <  1:1023431/107‑1 (MQ=255)                                                                                    gATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGgaa                                                                                                      >  2:1023431/1‑107 (MQ=255)                                                                                        ttCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATAGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGTGCTGCGAACCATCGCCCACCTgg                                                       >  1:146432/1‑150 (MQ=255)                                                                                              cAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGTGCTGCGAACCCTCGCCCACCTGGTCGGCa                                                 <  2:846180/150‑1 (MQ=255)                                                                                                  gagggttcgcagcacttcttcgttggtcatggtgttcttcctgttgaagttGGATGGCCCTGCCCATGTCGGGCCAt                                                                                                                      >  2:665015‑M1/52‑77 (MQ=255)                                                                                                  gagggttcgcagcacttcttcgttggtcatggtgttcttcctgttgaagttGGATGGCCCTGCCCATGTCGGGCCAt                                                                                                                      <  1:665015‑M1/26‑1 (MQ=255)                                                                                                        cacaGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAGGTGCTGCGAACCCTCGCCCACCTGGTCGGCACCCCTTAcgc                                       <  2:536674/150‑1 (MQ=255)                                                                                                        cacaGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGTGCTGCGAACCCTCGCCCACCTGGTCGGCACCCCTTAcgc                                       >  1:164667/1‑150 (MQ=255)                                                                                                          cagcagTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGTGCTGCGAACCCTCGCCCACCTGGTCGGCACCCCTTACgcgc                                     >  2:769192/1‑150 (MQ=255)                                                                                                            gcagTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGTGCTGCGAACCCTCGCCCACCTGGTCGGCACCCCTTACGCGCCa                                   >  1:1351248/1‑150 (MQ=255)                                                                                                                tATCTATGTAGCGCAGGCAATTCGCAGGCATTCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGTGCTGCGAACCCTCGCCCACCTGGTCGGCACCCCTTACGCGCCAgcgc                               >  1:9182/1‑150 (MQ=255)                                                                                                                      tGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGTGCTGCGAACCCTCGCCCACCTGGTCGGCACCCCTTAcg                                        >  1:937753/1‑135 (MQ=255)                                                                                                                      tGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGTGCTGCGAACCCTCGCCCACCTGGTCGGCACCCCTTAcg                                        <  2:937753/135‑1 (MQ=255)                                                                                                                         aGCGCAGGCAATTCGCAGGCATGCGTGAGGAAGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGTGCTGCGAACCCTCGCCCACCTGGTCGGCACCCCTTACGCGCCAGCGCTCAAAGaca                      <  2:332981/150‑1 (MQ=255)                                                                                                                             cAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGTGCTGCGAACCCTCGCCCACCTGGTCGGCACCCCTTACGCGCCAGCGCTCAAAGACACCAt                  >  1:697513/1‑150 (MQ=255)                                                                                                                                     tcttcctgttgaagttGGATGGCCCGACATGGGCAGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGTGCTGCGAACCCTCGCCCACCt                                                         <  1:403637‑M1/87‑1 (MQ=255)                                                                                                                                     tcttcctgttgaagttGGATGGCCCGACATGGGCAGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGTGCTGCGAACCCTCGCCCACCt                                                         >  2:403637‑M1/17‑103 (MQ=255)                                                                                                                                         aGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGTGCTGCGAACCCTCGCCCACCTGGTCGGCACCCCTTACGCGCCAGCGCTCAAAGACACCATCCGCACCCTTAc      >  1:1103001/1‑150 (MQ=255)                                                                                                                                           gCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCGACTTCAACAGGAAGAACACCATGACCAACGAAGAAGtgctgc                                                                         >  2:823500/1‑81 (MQ=255)                                                                                                                                           gCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGtgctgc                                                                         <  1:823500/81‑1 (MQ=255)                                                                                                                                           gCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGTGCTGCGAACCCTCGCCCACCTGGt                                                      <  2:734877/100‑1 (MQ=255)                                                                                                                                           gCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGTGCTGCGAACCCTCGCCCACCTGGt                                                      >  1:734877/1‑100 (MQ=255)                                                                                                                                             aTGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGTGCTGCGAACCCTCGCCCACCTGGTCGGCACCCCTTACGCGCCAGCGCTCAAAGACACCATCCGCACCCTTACCGGc  <  2:164667/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              CTGCGTGCCGGCGATCGCTTTGTAATCCCCGCCGGCTTCAAAGGCACTTGGGAGGTGCTGGAGCCTTGCCGCAAGATCTATGTGATGTTCGAGCAGAAGTAACCACAGCAGTATCTATGTAGCGCAGGCAATTCGCAGGCATGCGTGAGGATGGCCCTGCCCATGTCGGGCCATCCAACTTCAACAGGAAGAACACCATGACCAACGAAGAAGTGCTGCGAACCCTCGCCCACCTGGTCGGCACCCCTTACGCGCCAGCGCTCAAAGACACCATCCGCACCCTTACCGGC  >  NC_002947/6029971‑6030260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.