| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6152896 | 37 (0.700) | 5 (0.100) | 5/230 | NT | 13.4% | coding (421/489 nt) | PP_5738 | hypothetical protein |
| ? | NC_002947 | = 6152922 | 30 (0.610) | coding (447/489 nt) | PP_5738 | hypothetical protein | |||||
CTCTCACCCGGTTACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACTG > NC_002947/6152748‑6153040 | ctctCACCCGGTTACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCg < 2:463340/150‑1 (MQ=255) tcACCCGGTTACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGccc < 1:659463/150‑1 (MQ=255) tcACCCGGTTACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGccc > 2:1163809/1‑150 (MQ=255) cccGGTTACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGtt < 2:1079023/150‑1 (MQ=255) ccGGTTACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTg > 1:182979/1‑150 (MQ=255) ttACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGa > 2:915614/1‑150 (MQ=255) tACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTTGCCCGTTGCCGaa < 2:91798/150‑1 (MQ=255) tACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGaa < 1:120041/150‑1 (MQ=255) aCGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAg < 1:292415/150‑1 (MQ=255) aCGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGC‑CATACGTGTACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAg < 1:1156229/150‑1 (MQ=255) tCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAATGCaa < 2:303345/150‑1 (MQ=255) gAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGt < 1:187371/150‑1 (MQ=255) gAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGt < 1:494268/150‑1 (MQ=255) aTTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCt < 2:182979/150‑1 (MQ=255) aTTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCt > 2:687849/1‑150 (MQ=255) ttCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTg < 2:1300032/150‑1 (MQ=255) ttCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTg > 1:475021/1‑150 (MQ=255) ttCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGgaccgg > 1:698953‑M2/1‑144 (MQ=255) aGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCAt < 1:915614/150‑1 (MQ=255) aCGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCAcc < 2:475021/150‑1 (MQ=255) tttGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCcagttcacttgccttcggcaacgggcgaccggcaggatttgccttga < 2:459154‑M1/150‑48 (MQ=255) tttGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCaa < 1:1163809/150‑1 (MQ=255) gCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGc < 1:997442/150‑1 (MQ=255) cAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACCCGAGCCGATCGAATCAAGGCAAACCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGcc < 1:945920/150‑1 (MQ=255) tGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGCGTTCGCACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGc < 1:1155374/150‑1 (MQ=255) cTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCcagctcacttgccttcggcaacgggcgaccggca < 1:1204687‑M1/113‑35 (MQ=255) cTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCcagctcacttgccttcggcaacgggcgaccggca > 2:1204687‑M1/1‑79 (MQ=255) cgcgCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGc < 1:692228/150‑1 (MQ=255) gACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCcagctcacttgccttcggcaacgggcgaccggcaggatttgccttgattcgatc < 1:342201‑M1/124‑55 (MQ=255) gACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCcagctcacttgccttcggcaacgggcgaccggcaggatttgccttgattcgatc > 2:342201‑M1/1‑70 (MQ=255) gACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGATGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGcc < 1:687849/150‑1 (MQ=255) gCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCCAATCATGCCGGTCGCCCGTTGCCGAAGGCAACTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGc < 1:320202/150‑1 (MQ=255) cGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTCAGCGTCCGCCCAACGCACCTTGCGTAAGTCAg < 1:1321026/150‑1 (MQ=255) ggATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTgta < 1:507112/114‑1 (MQ=255) ggATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTgta > 2:507112/1‑114 (MQ=255) gCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCAcc < 2:1335549/82‑1 (MQ=255) gCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCAcc > 1:1335549/1‑82 (MQ=255) gACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATAccc > 1:1059567/1‑150 (MQ=255) gATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGgaccggcaggatttgccttgattcgatcggaaagtgtctgcccatccgcatagaggcacacaattacgtc < 1:342201‑M2/124‑71 (MQ=255) gATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGgaccggcaggatttgccttgattcgatcggaaagtgtctgcccatccgcatagaggcacacaattacgtc > 2:342201‑M2/1‑54 (MQ=255) gATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCgg > 2:982576/1‑150 (MQ=255) tCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGc < 1:176474/125‑1 (MQ=255) tCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGc > 2:176474/1‑125 (MQ=255) tCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAACTGgaccggcaggatttgccttgattcgatcggaaagtgtctgcccatccgcatagaggcacacaattacgtctggcgcgaggtcatgcaactgcgcttttgcaaa < 2:459154‑M2/150‑104 (MQ=255) aaGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTg > 1:805813/1‑150 (MQ=255) aGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGAAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGc > 2:520613/1‑150 (MQ=255) gCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGccc > 2:1237989/1‑150 (MQ=255) cAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTgta > 2:1191318/1‑82 (MQ=255) cAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTgta < 1:1191318/82‑1 (MQ=255) tGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGgaccggcaggatttgccttgattcgatcggaaagtgtctgcccatccgcatagaggcacacaattacgtctggcgcgag < 1:1204687‑M2/113‑80 (MQ=255) tGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGgaccggcaggatttgccttgattcgatcggaaagtgtctgcccatccgcatagaggcacacaattacgtctggcgcgag > 2:1204687‑M2/1‑34 (MQ=255) ccGGTCcagctcacttgccttcggcaacgggcgaccggcaggatttgccttgattcgatcggaaagtgtctgcccatccgcatagaggcacacaattacgtctggcgcgaggtcatgcaactgcgcttttgcaaatggcgtcaccctgaa > 1:698953‑M1/1‑6 (MQ=255) | CTCTCACCCGGTTACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATG‑ACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACTG > NC_002947/6152748‑6153040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |