New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 161086	40 (0.760)	6 (0.120)	5/230	NT	12.9%	intergenic (‑51/+39)	PP_0151/PP_0152	hypothetical protein/hypothetical protein
	?	NC_002947	= 161100	44 (0.900)					intergenic (‑65/+25)	PP_0151/PP_0152	hypothetical protein/hypothetical protein

GACCAGGCTTTGTGTGGTGGTATCCATGGCATGGGCGCTGGCCATGCCTGCGGCGGCGAACAGCAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGATGTGCACAAAGGCGCTTTCCAGTCGGGCGCCGCGGATAGCGCCCTGAGTGCCGA  >  NC_002947/160952‑161246                                                                                                                                                     |                                                                                                                                                   gACCAGGCTTTGTGTGGTGGTATCCATGGCATGGGCGCTGGCCATGCCTGCGGCGGCGAACAGCAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAAc                                                                                                                                                   <  1:1045710‑M2/150‑2 (MQ=255)       gCTTTGTGTGGTGGTATCCATGGCATGGGCGCTGGCCATGCCTGCGGCGGCGAACAGCAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAAcgcacct                                                                                                                                             <  2:1138798‑M2/150‑8 (MQ=255)                     tATCCATGGCATGGGCGCTGGCCATGCCTGCGGCGGCGAACAGCAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGgcgc                                                                                                                               <  1:920918/150‑1 (MQ=255)                       tCCATGGCATGGGCGCTGGCCATGCCTGCGGCGGCGAACAGCAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCAt                                                                                                                                    <  2:623858/143‑1 (MQ=255)                       tCCATGGCATGGGCGCTGGCCATGCCTGCGGCGGCGAACAGCAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCAt                                                                                                                                    >  1:623858/1‑143 (MQ=255)                        ccATGGCATGGGCGCTGGCCATGCCTGCGGCGGCGAACAGCAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTa                                                                                                                            >  1:77445/1‑150 (MQ=255)                         catggcatggGCGCTGGCCATGCCTGCGGCGGCGAACAGCAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTAt                                                                                                                           >  1:204558/1‑150 (MQ=255)                          atgggattgGCGCTGGTCATGCCTGCGGGGGCGAACAGCAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATc                                                                                                                          >  2:54553/1‑150 (MQ=255)                                       tGGCCATGCCTGCGGCGGCGAACAGCAATGGCAACAGAGAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGAt                                                                                                             <  2:1045710/150‑1 (MQ=255)                                         gCCATGCCTGCGGCGGCGAACAGCAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATgg                                                                                                           <  2:77445/150‑1 (MQ=255)                                          ccATGCCTGCGGCGGCGAACAGCAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTa                                                                                                                            >  2:719729/1‑132 (MQ=255)                                          ccATGCCTGCGGCGGCGAACAGCAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTa                                                                                                                            <  1:719729/132‑1 (MQ=255)                                          ccATGCCTGCGGCGGCGAACAGCAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGc                                                                                                          <  1:144668/150‑1 (MQ=255)                                                 tGCGGCGGCGAACAGCAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGc                                                                                                    <  1:900232/149‑1 (MQ=255)                                                 tGCGGCGGCGAACAGCAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGc                                                                                                    >  2:900232/1‑149 (MQ=255)                                                       ggcgAACAGCAATTGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATTGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCtgt                                                                                             <  1:81123/150‑1 (MQ=255)                                                            aCAGCAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATc                                                                                        >  2:482115/1‑150 (MQ=255)                                                              aGCAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATAGc                                                                                      >  1:649409/1‑150 (MQ=255)                                                               gCAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCt                                                                                     >  2:702234/1‑150 (MQ=255)                                                                cAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTg                                                                                    >  1:1102233/1‑150 (MQ=255)                                                                       aaCAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCa                                                                             >  1:355564/1‑150 (MQ=255)                                                                                   aTGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGt                                                                 >  2:399283/1‑150 (MQ=255)                                                                                     gAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCTGGCATGTTc                                                               <  2:649409/150‑1 (MQ=255)                                                                                       gCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGa                                                             >  1:1136849/1‑150 (MQ=255)                                                                                        cTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGaa                                                            <  2:204558/150‑1 (MQ=255)                                                                                            cTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCAGGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGa                                                        <  2:328277/150‑1 (MQ=255)                                                                                             ttGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGAt                                                       >  1:298074/1‑150 (MQ=255)                                                                                             ttGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGAt                                                       >  1:1421857/1‑150 (MQ=255)                                                                                             ttGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGAt                                                       >  2:704002/1‑150 (MQ=255)                                                                                                   gCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGATGTGcac                                                 >  1:535005/1‑150 (MQ=255)                                                                                                       gAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGATGTGCACAAAg                                             <  2:1102233/150‑1 (MQ=255)                                                                                                           aaTGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGATGTGCACAAAGgcgc                                         <  1:399283/150‑1 (MQ=255)                                                                                                              gAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGATGTGCACAAAGGCGCttt                                      <  1:482115/150‑1 (MQ=255)                                                                                                               aaCGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCCGTTTCCAACGGATGTGCACAAAGGCGCTTTc                                     <  1:1106974/150‑1 (MQ=255)                                                                                                                aCGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGGGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGATGTGCACAAAGGCGCTTTcc                                    >  1:174924/1‑150 (MQ=255)                                                                                                                aCGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGATGTGCACAAAg                                             >  2:1034734/1‑141 (MQ=255)                                                                                                                aCGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGATGTGCACAAAg                                             <  1:1034734/141‑1 (MQ=255)                                                                                                                   gCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGCGCCACGGACGCCTCGGCCAGCTCTGCATCGGGAGCTGGTAGGGCCGGCATGTTCGAACGGATGTGCACAAAGGCGCTTTCCAGt                                 >  2:871161/1‑150 (MQ=255)                                                                                                                       aGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGATGTGCACAAAGGCGCTTTCCAGTCggg                             >  1:888527/1‑150 (MQ=255)                                                                                                                            aCCTCAGGTGCGAGGGCCGAAGCCAAcgcacctgaggtaggcttcgccgttcatttttccagccttcaagaaagctcatgcgttatctgttgccattgctgttcgacgccgcaggcatggccagcgcccatgcca                                       <  1:156859‑M2/135‑110 (MQ=255)                                                                                                                            aCCTCAGGTGCGAGGGCCGAAGCCAAcgcacctgaggtaggcttcgccgttcatttttccagccttcaagaaagctcatgcgttatctgttgccattgctgttcgacgccgcaggcatggccagcgcccatgcca                                       >  2:156859‑M2/1‑26 (MQ=255)                                                                                                                            aCCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGATGTGCACAAAGGCGCTTTCCAGTCGGGcgccg                        <  1:702234/150‑1 (MQ=255)                                                                                                                                cAGGGGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGATGTGCACAAAGGCGCTTTCCAGTCGGGCGCCGCGGa                    <  2:1369770/150‑1 (MQ=255)                                                                                                                                   gTGCGAGGGCCGAAGCCAAcgcacctgaggtaggcttcgccgttcatttttccagccttcaagaaagc                                                                                                   <  2:908338‑M2/68‑50 (MQ=255)                                                                                                                                   gTGCGAGGGCCGAAGCCAAcgcacctgaggtaggcttcgccgttcatttttccagccttcaagaaagc                                                                                                   >  1:908338‑M2/1‑19 (MQ=255)                                                                                                                                   gTGCGAGGGCCGAAGCCAAcgcacctgaggtaggcttcgccgttcatttttccagccttcaa                                                                                                         >  2:562848‑M2/1‑19 (MQ=255)                                                                                                                                   gTGCGAGGGCCGAAGCCAAcgcacctgaggtaggcttcgccgttcatttttccagccttcaa                                                                                                         <  1:562848‑M2/62‑44 (MQ=255)                                                                                                                                          ggCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGATGTGCACAAAGGCGCt                                        <  2:677303/120‑1 (MQ=255)                                                                                                                                          ggCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGATGTGCACAAAGGCGCt                                        >  1:677303/1‑120 (MQ=255)                                                                                                                                           gCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGATGTGCACAAAGGCGCTTTCCAGTCGGGCGCCGCGGATAGCGCCCTGa         <  2:940017/150‑1 (MQ=255)                                                                                                                                            ccGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGATGTGCACAAAGGCGCTTTCCAGTCGGGCGCCGCGGATAGCGCCCTGAg        >  2:560190/1‑150 (MQ=255)                                                                                                                                             cGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGATGTGCACAAAGGCGCTTTCCAGTCGGGCGCCGCGGATAGCGCCCTGAGt       <  1:54553/150‑1 (MQ=255)                                                                                                                                                  ccAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGATGTGCACAAAGGCGCTTTCCAGTCGGGCGCCGCGGATAGCGCCCTGAGTGCcga  <  2:1136849/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GACCAGGCTTTGTGTGGTGGTATCCATGGCATGGGCGCTGGCCATGCCTGCGGCGGCGAACAGCAATGGCAACAGATAACGCATGAGCTTTCTTGAAGGCTGGAAAAATGAACGGCGAAGCCTACCTCAGGTGCGAGGGCCGAAGCCAACGCACCTGTTGTGCATGGCGCGTATCAGAGTGCCAGGATGGCCTGGGCCAGCTGTGCATCGCTGGCTTGCAGGGCCGGCATGTTCGAACGGATGTGCACAAAGGCGCTTTCCAGTCGGGCGCCGCGGATAGCGCCCTGAGTGCCGA  >  NC_002947/160952‑161246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.