New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1103269 =	34 (0.650)	6 (0.120)	5/238	NT	14.5%	coding (23/1266 nt)	murA	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
	?	NC_002947	1103298 =	38 (0.750)					coding (52/1266 nt)	murA	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase

GCCAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAGACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAGCTGTTCGGGCGCATGGGCATCGAGCCTGTGATCG  >  NC_002947/1103155‑1103445                                                                                                                                                |                                                                                                                                                    ctcgatcatggtggtgatgtcgtgcaggtgcggcaggttgcccacggtgaccgggccatcggccagcagggtggctgccagaatcggcagggctgcgtttttcgcgcccgaaatgcggcgctcgccttgacggcgagatccgcATTTCgg                                                                                                                                               <  1:567354‑M2/7‑1 (MQ=255)  ccAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAGACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCggg                                                                                                                                              <  2:1036418/150‑1 (MQ=255)         cagcaTCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAGACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGaaa                                                                                                                                       >  1:469341/1‑150 (MQ=255)               ccATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAGACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCa                                                                                                                                 >  2:715551/1‑150 (MQ=255)                 aTGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACATGGAGGAGAGACTAAAATGGTTACAACGAGTAATAGTTCCGTCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGTGCGAAAAACGCAGc                                                                                                                               >  1:678441/1‑150 (MQ=255)                         aCCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCCAGACTCCAATGGACAAACTGATTATTACTGGCGGCGTTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGa                                                                                                                       <  1:1175116/150‑1 (MQ=255)                             tGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAGACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCt                                                                                                                   >  1:366021/1‑150 (MQ=255)                             ggaagggtttCGGCAGCGCAGCGGGGGCTGGGCGCACCTGAGCCAACTTGGCGGCGAGACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCt                                                                                                                   <  2:617830/143‑1 (MQ=255)                               aaaTTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAGACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTgg                                                                                                                 <  2:481356/150‑1 (MQ=255)                                 aTTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAGACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGcc                                                                                                               >  2:699238/1‑149 (MQ=255)                                        agcagcGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAGACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCAccc                                                                                                        <  1:789401/150‑1 (MQ=255)                                             cgcagcCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAGACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCctgctg                                                                                                   <  2:679772/150‑1 (MQ=255)                                                   gggtgcggAGCGCACCTGCGCCAGCTTGGCGGCGAGACTCCAATGGACAAACTGATTGTTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGAt                                                                                             <  2:576777/143‑1 (MQ=255)                                                    tGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAGACTCCAATGGACAAACTGATTATTACTGGCGTCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATg                                                                                            <  1:526636/150‑1 (MQ=255)                                                          gAGCGCACCTGAGCCAACTTGGCGGCGAGACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCa                                                                                                               <  2:241755/125‑1 (MQ=255)                                                          gAGCGCACCTGAGCCAACTTGGCGGCGAGACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGACCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCa                                                                                                               >  1:241755/1‑125 (MQ=255)                                                             cgcACCTGAGCCAACTTGGCGGCGAGACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCa                                                                                   >  1:365636/1‑150 (MQ=255)                                                                  cTGAGCCAACTTGGCGGCGAGACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAACAACGCAGACCTACCGATTCTGGCTACCACCCGCCGTTTCGACGGCCCGTTCACCGtt                                                                              >  2:1143072/1‑149 (MQ=255)                                                                   tGAGCCAACTTGGCGGCGAGACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTgg                                                                             <  2:469341/150‑1 (MQ=255)                                                                    taGCCAACTTGGCGGCGACGCTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTggg                                                                            <  2:678441/149‑1 (MQ=255)                                                                            ttGGCGGCGAGACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGc                                                                    >  2:1078096/1‑150 (MQ=255)                                                                                    gagaCTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGAt                                                                                             <  1:1374157/117‑1 (MQ=255)                                                                                    gagaCTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGAt                                                                                             >  2:1374157/1‑117 (MQ=255)                                                                                       aCTCCAATGGACAAACTTATTATTACTGGCGGCGCTCGCCTTGACTGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCAc                                                         <  1:1161792/150‑1 (MQ=255)                                                                                          ccAATGGACAAACTGATTATTACTGGCGGCGCTCGACTTGACGGCGCGGTCCCCGTTTCGGGCGCGAACGACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGAc                                                      >  1:27760/1‑150 (MQ=255)                                                                                           cAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGa                                                       >  1:1363567/1‑148 (MQ=255)                                                                                           cAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGa                                                       <  2:1363567/148‑1 (MQ=255)                                                                                           cAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACa                                                     >  2:887615/1‑150 (MQ=255)                                                                                             aTGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATc                                                   <  1:1322694/150‑1 (MQ=255)                                                                                                     aCTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCAt                                           <  2:366021/150‑1 (MQ=255)                                                                                                            ccgaaatGCGGATCTCGCCGTCAAGGCGAGCGCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAg                                    <  1:567354‑M1/143‑1 (MQ=255)                                                                                                            attaCTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAg                                    >  1:500408/1‑150 (MQ=255)                                                                                                             ttaCTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAGc                                   >  1:718495/1‑150 (MQ=255)                                                                                                             ataCTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAGc                                   >  2:973425/2‑150 (MQ=255)                                                                                                                cTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAGCTGt                                >  2:1102061/1‑150 (MQ=255)                                                                                                                    cggatctcgccgtcaaggcgagcgccgcATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAGCTGTTCgg                            <  2:567354‑M2/122‑1 (MQ=255)                                                                                                                     ggatctcgccgtcaaggcgagcgccgcATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTgg                                                                             <  2:584331‑M2/73‑1 (MQ=255)                                                                                                                     ggatctcgccgtcaaggcgagcgccgcATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTgg                                                                             >  1:584331‑M2/28‑100 (MQ=255)                                                                                                                     ggatctcgccgtcaaggcgagcgccgcATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATc                                       >  1:647213‑M2/28‑138 (MQ=255)                                                                                                                     ggatctcgccgtcaaggcgagcgccgcATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATc                                       <  2:647213‑M2/111‑1 (MQ=255)                                                                                                                      GCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAGCTGTTCGGGc                          >  2:249749‑M1/1‑150 (MQ=255)                                                                                                                      GCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAGCTGTTCGGGc                          >  1:715551‑M1/1‑150 (MQ=255)                                                                                                                            gCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCt                                                                      <  2:1293077/100‑1 (MQ=255)                                                                                                                            gCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCt                                                                      >  1:1293077/1‑100 (MQ=255)                                                                                                                                   cGGCGAGACCCGCATTTCGGGCGCGAAAAGCGCAGCCCTGCCGATTCTGGCAGCCACACTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCCGCACGAGATGACCACCATGATCGAGCTGTTCGGGCGCATGGGCATCGa             <  2:27760/150‑1 (MQ=255)                                                                                                                                    ggCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAGCTGTTCGGGCGCATGGGCATCGAg            >  1:404075/1‑150 (MQ=255)                                                                                                                                    ggCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAGCTGTTCGGGCGCATGGGCATCGAg            >  1:1074345/1‑150 (MQ=255)                                                                                                                                       gagaTCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAGCTGTTCGGGCGCATGGGCATCGAGCCt         >  1:1426534/1‑150 (MQ=255)                                                                                                                                         gaTCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAGCTGTTCGGGCGCATGGGCATCGAGCCtgt       <  2:404075/150‑1 (MQ=255)                                                                                                                                              gcATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACTCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGAGTTCGCCTCCATGATCGAGCTGTTCGGGCGCATGGGCATCGAGCCTGTGATCg  >  1:797989‑M2/3‑150 (MQ=255)                                                                                                                                                |                                                                                                                                                    GCCAATGGCAGCATCCATGCGGTAACCATGAAATTTTTCAGCAGCGCAGCCTGGGCTGAGCGCACCTGAGCCAACTTGGCGGCGAGACTCCAATGGACAAACTGATTATTACTGGCGGCGCTCGCCTTGACGGCGAGATCCGCATTTCGGGCGCGAAAAACGCAGCCCTGCCGATTCTGGCAGCCACCCTGCTGGCCGATGGCCCGGTCACCGTGGGCAACCTGCCGCACCTGCACGACATCACCACCATGATCGAGCTGTTCGGGCGCATGGGCATCGAGCCTGTGATCG  >  NC_002947/1103155‑1103445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.