New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2340035 =	40 (0.760)	3 (0.060)	3/232	NT	7.1%	coding (634/1308 nt)	dctA‑II	C4‑dicarboxylate transport protein
	?	NC_002947	2340072 =	41 (0.830)					coding (671/1308 nt)	dctA‑II	C4‑dicarboxylate transport protein

GTGCTGGAGTCGGCCTCGACCATGGTGTTTCGCATCTTCGGCTACCTGATGCGCTTTGCCCCGATCGGCGCTTTCGGCGCACTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAAGAGTTCCTCGTGGTGCTGGGTACTTCCTCCACCGAGCCGGTGCTGCCGC  >  NC_002947/2339924‑2340218                                                                                                                                                     |                                                                                                                                                   ccacgaggaactcttcgcggaaatagcgcagcaacttccacaggctgaagccatgggcgcggcagatgccaccgagcaccaccagcacgaagaaggcgcaggcgatgtacaACTTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTg                                                                                                                                                   >  2:578458‑M1/112‑150 (MQ=255)     tGGAGTCGGCCTCGACCATGGTGTTTCGCATCTTCGGCTACCTGATGCGCTTTGCCCCGATCGGCGCTTTCGGCGCACTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACa                                                                                                                                               >  1:551951/1‑150 (MQ=255)     tGGAGTCGGCCTCGACCATGGTGTTTCGCATCTTCGGCTACCTGATGCGCTTTGCCCCGATCGGCGCTTTCGGCGCACTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACa                                                                                                                                               >  1:551732/1‑150 (MQ=255)      ggAGTCGGCCTCGACCATGGTGTTTCGCATCTTCGGCTACCTGATGCGCTTTGCCCCGATCGGCGCTTTCGGCGCACTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACAt                                                                                                                                              <  1:653522/150‑1 (MQ=255)            ggCCTCGACCATGGTGTTTCGCATCTTCGGCTACCTGATGCGCTTTGCCCCGATCGGCGCTTTCGGCGCACTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTg                                                                                                                                        >  1:381360/1‑150 (MQ=255)                     cATGGTGTTTCGCATCTTCGGCTACCTGATGCGCTTTGCCCCGATCGGCGCTTTCGGCGCACTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCcttctt                                                                                                                               <  2:614113/150‑1 (MQ=255)                      aTGGTGTTTCGCATCTTCGGCTACCTGATGCGCTTTGCCCCGATCGGCGCTTTCGCCCCCCTCCCCTTCCCCCCCCCCCCCTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCttcttc                                                                                                                              >  1:530656/1‑150 (MQ=255)                            tttCGCATCTTCGGCTACCTGATGCGCTTTGCCCCGATCGGCGCTTTCGGCGCACTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCtg                                                                                                                        <  1:1171892/150‑1 (MQ=255)                                gCATCTTCGGCTACCTGATGCGCTTTGCCCCGATCGGCGCTTTCGGCGCACTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCtggtgg                                                                                                                    >  1:1282000/1‑150 (MQ=255)                                    cTTCGGCTACCTGATGCGCTTTGCCCCGATCGGCGCTTTCGGCGCACTGGCATTCACCGTGGGCCAGTAAGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCt                                                                                                                <  2:759906/150‑1 (MQ=255)                                      tCGGCTACCTGATGCGCTTTGCCCCGATCGGCGCTTTCTGCGCACTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCg                                                                                                              <  1:1079034/150‑1 (MQ=255)                                              cTGATGCGCTTTGCCCCGATCGGCGCTTTCGGCGCACTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTgcgc                                                                                                                                     >  2:1140717/1‑119 (MQ=255)                                              cTGATGCGCTTTGCCCCGATCGGCGCTTTCGGCGCACTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTgcgc                                                                                                                                     <  1:1140717/119‑1 (MQ=255)                                                  tGCGCTTTGCCCCGATCGGCGCTTTCGGCGCACTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGcc                                                                                                  >  2:861354/1‑150 (MQ=255)                                                      cTTTGCCCCGATCGGCGCTTTCGGCGCACTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCgcgc                                                                                              <  2:1282000/150‑1 (MQ=255)                                                            cccGATCGGCGCTTTCGGCGCACTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTg                                                                                                           <  1:548943/131‑1 (MQ=255)                                                            cccGATCGGCGCTTTCGGCGCACTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTg                                                                                                           >  2:548943/1‑131 (MQ=255)                                                                   ggCGCTTTCGGCGCACTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGc                                                                                 <  1:789319/150‑1 (MQ=255)                                                                     cgcTTTCGGCGCACTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCt                                                                               >  2:1042488/1‑150 (MQ=255)                                                                                 aCTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGc                                                                                                   <  1:32507/118‑1 (MQ=255)                                                                                 aCTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGc                                                                                                   >  2:32507/1‑118 (MQ=255)                                                                                   tGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTg                                                                                                           >  1:260657/1‑108 (MQ=255)                                                                                   tGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTg                                                                                                           <  2:260657/108‑1 (MQ=255)                                                                                       aTTCACCGTGGGCGAGTACGGGATTACGTCCCTTGGCGCGCTGACCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTa                                                             >  2:86704/1‑150 (MQ=255)                                                                                       aTTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTa                                                             >  1:1376606/1‑150 (MQ=255)                                                                                           aCCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTc                                                         >  2:392311/1‑150 (MQ=255)                                                                                              gTGGGCCAGTACGGGATTACGTCCCTTGGGGCGTTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCcgc                                                      <  2:579852/150‑1 (MQ=255)                                                                                                gggCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCa                                                                                           <  1:1091245/111‑1 (MQ=255)                                                                                                gggCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCa                                                                                           >  2:1091245/1‑111 (MQ=255)                                                                                                 ggCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGaa                                                   <  1:1042488/150‑1 (MQ=255)                                                                                                   ccAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGACACCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAaga                                                 >  2:543591/1‑150 (MQ=255)                                                                                                    cAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAagag                                                >  2:492344/1‑150 (MQ=255)                                                                                                       tACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAAGAGTTc                                             >  2:451915/1‑150 (MQ=255)                                                                                                            gagtACGTCCCTTGGCGCGCTCGCCAAGCTGGTCGGGACGTTGTACCTCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTTGAAGTTGCTGCGCTATTTCCGCGAAGAGTTCCTCgc                                        <  2:318930/147‑2 (MQ=255)                                                                                                             aTTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAAGAGTTCCTCgtg                                       <  2:1258158/150‑1 (MQ=255)                                                                                                             aTTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAAGAGTTCCTCgtg                                       <  1:861354/150‑1 (MQ=255)                                                                                                              caacgtcccgaccagcttggccagcgcgccaagggaagtTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAAGAGTTCCTCgtgg                                      >  2:578458‑M2/40‑150 (MQ=255)                                                                                                                  GTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAAGAGTTCCTCGTGGTGCt                                  <  1:1375258‑M1/150‑1 (MQ=255)                                                                                                                   tcccgaccagcttggccagcgcgccaagggacgtTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATg                                                                                         <  2:160779‑M2/60‑1 (MQ=255)                                                                                                                   tcccgaccagcttggccagcgcgccaagggacgtTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATg                                                                                         >  1:160779‑M2/35‑94 (MQ=255)                                                                                                                   TCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAAGAGTTCCTCGTGGTGCTg                                 >  2:1375258‑M1/1‑150 (MQ=255)                                                                                                                    gtCTTGTCGCGCTGGCCAATCTGGTCGGGACGTTGTACATCGCCTGCGCCTTGTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAAGAGTTCCTCGTGGTGCTgg                                >  2:657476‑M1/3‑150 (MQ=255)                                                                                                                     CCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAAGAGTTCCTCGTGGTGCTggg                               >  1:451915‑M1/1‑150 (MQ=255)                                                                                                                            gcgcTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAAGAGTTCCTCGTGGTGCTGGGTACTtcc                        >  1:1049901/1‑150 (MQ=255)                                                                                                                                  gCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCAGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAAGAGTTACTCGTGGTGCTGGGTACTTCCTCCAcc                  >  2:1183491/1‑150 (MQ=255)                                                                                                                                    cAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTgg                                                                                                          >  1:161731/1‑60 (MQ=255)                                                                                                                                    cAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTgg                                                                                                          <  2:161731/60‑1 (MQ=255)                                                                                                                                    cAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAAGAGTTCCTCGTGGTGCTGGGTACTTCCTCCACCGa                >  2:742951/1‑150 (MQ=255)                                                                                                                                    cAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAAGAGTTCCTCGTGGTGCTGGGTACTTCCTCCACCGa                <  1:742951/150‑1 (MQ=255)                                                                                                                                              gggacgtTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAAGAGTTCCTCGTGGTGCTGGGTACTTCCTCCACCGAGCCGGtgctg      >  1:140118‑M2/8‑150 (MQ=255)                                                                                                                                                  cgtTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAAGAGTTCCTCGTGGTGCTGGGTACTTCCTCCACCGAGCCGGTGCTGCcgc  <  1:543591‑M2/147‑1 (MQ=255)                                                                                                                                                    tTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAAGAGTTCCTCGTGGTGCTGGGTACTTCCTCCACCGAGc              >  1:682525‑M2/2‑136 (MQ=255)                                                                                                                                                    tTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAAGAGTTCCTCGTGGTGCTGGGTACTTCCTCCACCGAGc              <  2:682525‑M2/135‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GTGCTGGAGTCGGCCTCGACCATGGTGTTTCGCATCTTCGGCTACCTGATGCGCTTTGCCCCGATCGGCGCTTTCGGCGCACTGGCATTCACCGTGGGCCAGTACGGGATTACGTCCCTTGGCGCGCTGGCCAAGCTGGTCGGGACGTTGTACATCGCCTGCGCCTTCTTCGTGCTGGTGGTGCTCGGTGGCATCTGCCGCGCCCATGGCTTCAGCCTGTGGAAGTTGCTGCGCTATTTCCGCGAAGAGTTCCTCGTGGTGCTGGGTACTTCCTCCACCGAGCCGGTGCTGCCGC  >  NC_002947/2339924‑2340218

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.