New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2410758 =	50 (0.950)	3 (0.060)	3/232	NT	6.2%	coding (733/2742 nt)	acnA‑I	aconitate hydratase
	?	NC_002947	2410803 =	44 (0.890)					coding (688/2742 nt)	acnA‑I	aconitate hydratase

GCCTTTCTTGCGCAGCATCTGTGTCACGGTCAGCACCAGGTCAGTGGCAGTGATGCCCTCCCGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGCGGCCGTCGGCCTCACGGGTCCACACCGTGCGGCCCAGGTATTCCAGGTTGACCTGG  >  NC_002947/2410654‑2410948                                                                                                                                                      |                                                                                                                                                  gCCTTTCTTGCGCAGCATCTGTGTCACGGTCAGCACCAGGTCAGTGGCAGTGATGCCCTCCCGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATgcc                                                                                                                                                   >  2:512221/1‑150 (MQ=255)  gaggccgacggccgcacctatgccttccccgataccttggtgggcacagactcgcacaccaccatgatcaacggcctgggcgtactcggctggggtgtcggcgGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATgccg                                                                                                                                                  >  2:580907‑M1/104‑150 (MQ=255)      tCTTGCGCAGCATCTGTGTCACGGTCAGCACCAGGTCAGTGGCAGTGATGCCCTCCCGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGa                                                                                                                                              <  1:944856/150‑1 (MQ=255)      tCTTGCGCAGCATCTGTGTCACGGTCAGCACCAGGTCAGTGGCAGTGATGCCCTCCCGCAGCTTGCCGGTCACCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGa                                                                                                                                              <  1:95368/150‑1 (MQ=255)        ttGCGCAGCATCTGTGTCACGGTCAGCACCAGGTCAGTGGCAGTGATGCCCTCCCGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGaca                                                                                                                                            >  1:257578/1‑150 (MQ=255)            gcagcaTCTGTGTCACGGTCAGCACCAGGTCAGTGGCAGTGATGCCCTCCCGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACAcccc                                                                                                                                        >  1:793312/1‑150 (MQ=255)                  tCTGTGTCACGGTCAGCACCAGGTCAGTGTCAGTGATGCCCTCCCGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCTGCCGACACCCCAGCCGa                                                                                                                                  <  2:469226/150‑1 (MQ=255)                      tgtCACGGTCAGCACCAGGTCAGTGGCAGTGATGCCCTCCCGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTAc                                                                                                                              <  1:479966/150‑1 (MQ=255)                          aCGGTCAGCACCAGGTCAGTGGCAGTGATGCCCTCCCGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGccc                                                                                                                          <  1:1411885/150‑1 (MQ=255)                                 ggacaaGGTCAGTGGCAGTGAGGCCCTCCCGGAGCTTGCCGGTCAGCTTGAAGCCGATCACTGCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTCCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGt                                                                                                                   >  2:1155977/6‑150 (MQ=255)                                         tCAGTGGCAGTGATGCCCTCCCGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCAtg                                                                                                           <  2:35158/150‑1 (MQ=255)                                          cAGTGGCAGTGATGCCCTCCCGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCAtgg                                                                                                          <  2:257578/150‑1 (MQ=255)                                           aGTGGCAGTGATGCCCTCCCGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCAtggt                                                                                                         >  2:916869/1‑150 (MQ=255)                                             tGGCAGTGATGCCCTCCCGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCAtggtgg                                                                                                       >  2:401332/1‑150 (MQ=255)                                                cAGTGATGCCCTCCCGCAGCTTGCTGCATACGTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGgtgt                                                                                                    <  1:221/150‑1 (MQ=255)                                                    gATGCCCTCCCGCAGCTTGCCGGTCAGCTTAAAGCCGATCACTTCGGGGATCAGCATCGATACTGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGa                                                                                                <  1:1402135/150‑1 (MQ=255)                                                         ccTCCCGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCtg                                                                                           >  2:1028781/1‑150 (MQ=255)                                                          cTCCCGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCa                                                                                                                                       >  1:781013/1‑105 (MQ=255)                                                          cTCCCGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCa                                                                                                                                       <  2:781013/105‑1 (MQ=255)                                                           tCCCGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACAccc                                                                                                                                         >  1:547663/1‑102 (MQ=255)                                                           tCCCGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACAccc                                                                                                                                         <  2:547663/102‑1 (MQ=255)                                                           tCCCGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCtgtg                                                                                         >  1:1200613/1‑150 (MQ=255)                                                           ccccGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCtgtg                                                                                         <  2:1289287/149‑1 (MQ=255)                                                               gCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCcca                                                                                     >  1:1286472/1‑150 (MQ=255)                                                                    ttGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAg                                                                                >  1:1003974/1‑150 (MQ=255)                                                                            cAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATTGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCggg                                                                        <  1:1363992/150‑1 (MQ=255)                                                                               cTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTCAATCATGGTGGTGTGCGAGTCCGTGCCCACCAAGGTATCGGGGaa                                                                     >  1:1306033/1‑150 (MQ=255)                                                                                     gCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGGCCCATACTCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATa                                                               >  1:88351/1‑150 (MQ=255)                                                                                     gCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGa                                                                                                >  2:1243368/1‑117 (MQ=255)                                                                                     gCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGa                                                                                                <  1:1243368/117‑1 (MQ=255)                                                                                        gATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAATGTATCGGGTAAGGCATATGt                                                            <  2:1003974/150‑1 (MQ=255)                                                                                        gATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGaa                                                                     <  2:1105254/141‑1 (MQ=255)                                                                                        gATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGaa                                                                     >  1:1105254/1‑141 (MQ=255)                                                                                          tCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGc                                                          <  1:401332/150‑1 (MQ=255)                                                                                              ttCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGCGGcc                                                      >  1:718472/1‑150 (MQ=255)                                                                                                       cggcatcgaagcggaagcggccatgctcggccagccggtatcgatgcCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGCGGCCGTCGGCCTc                                             >  2:580907‑M2/48‑150 (MQ=255)                                                                                                         gCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGAGCGCCTCGTTGGGGTGCGAGTCTGTGCCCACCAAGATATCGGGGCAGGTATCGGAAAGGCCGTCGGCCTCAc                                           >  1:88165/1‑150 (MQ=255)                                                                                                            TCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGt                                                                                                                   <  2:523304‑M1/75‑1 (MQ=255)                                                                                                            TCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGt                                                                                                                   >  1:523304‑M1/1‑75 (MQ=255)                                                                                                              GATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGCGGCCGTCGGCCTCACGGGTc                                      >  2:793312‑M1/1‑150 (MQ=255)                                                                                                              GATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCAGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGCGGCCGTCGGCCTCACGGGTc                                      >  2:1381023‑M1/1‑150 (MQ=255)                                                                                                              GATACCGGCTGGCCCAGCATGGCCGCTTCCGCTTCGATGCCGCCGCAGCGTGATCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGCGGCCGTCGGCCTCACGGGTc                                      >  1:87833‑M1/1‑150 (MQ=255)                                                                                                               ATACCGGCTGGCCGAGCATGGCCGCTTCCGCCTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCtgt                                                                                          >  2:1146428‑M1/1‑97 (MQ=255)                                                                                                               ATACCGGCTGGCCGAGCATGGCCGCTTCCGCCTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCtgt                                                                                          <  1:1146428‑M1/97‑1 (MQ=255)                                                                                                                   cGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGCGGCCGTCGGCCTCACGGGTCCacac                                 >  1:358592/1‑150 (MQ=255)                                                                                                                     gCTGGCCGAGCATGGCCGCTTCCGCTTCNNTGCCGCCGACACCCNANCNGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGCGGCCGTCGGCCTCACGGGGCCACACCg                               >  1:994633/1‑150 (MQ=255)                                                                                                                        ggCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGCGGCCGTCGGCCTCACGGGTCCACACCGTGc                            <  2:1286472/150‑1 (MQ=255)                                                                                                                         gCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGCGGCCGTCGGCCTCACGGGTCCACACCGTGCg                           >  2:982439/1‑150 (MQ=255)                                                                                                                          ccGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGCGGCCGTCGGCCTCACGGGTCCACACCGTGCgg                          <  2:994633/150‑1 (MQ=255)                                                                                                                             atgctcggccagccggtatcgatgcCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGa                                                                                                >  2:402220‑M2/26‑77 (MQ=255)                                                                                                                             atgctcggccagccggtatcgatgcCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGa                                                                                                <  1:402220‑M2/52‑1 (MQ=255)                                                                                                                              gCATGGCCGCCTCCGCTTACACGCACCCGCCAACCCAGCCGAGTAAGCAAAGCACGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGCGGCCGTCGGCCTCACGGGTCCACACCGTGCGGCCCa                      <  2:654315/150‑1 (MQ=255)                                                                                                                                     cgcttccgcttcGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGCGGCCGTCGGCCTCACGGGTCCACACCGTGCGGCCCAGGTATTc               >  2:1290388/1‑150 (MQ=255)                                                                                                                                      gcttccgcttcGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGCGGCCGTCGGCCTCACGGGTCCACACCGTGCGGCCCAGGTATTcc              <  2:358592/150‑1 (MQ=255)                                                                                                                                      gcttcagcttcGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGCGGCCGTCGGCCTCACGGGTCCACACCGTGCGGCCCAGGTATTcc              >  2:1157024/1‑150 (MQ=255)                                                                                                                                         tccgcttcGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGCGGCCGTCGGCCTCACGGGTCCACACCGTGCGGCCCAGGTATTCCAgg           <  1:978949/150‑1 (MQ=255)                                                                                                                                             tatcgatgcCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGCGGCCGTCGGCCTCACGGGTCCACACCGTGCGGCCCAGGTATTCCAGGTTGa       <  1:580907‑M2/141‑1 (MQ=255)                                                                                                                                                  atgcCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGCGGCCGTCGGCCTCACGGGTCCACACCGTGCGGCCCAGGTATTCCAGGTTGACCtgg  <  1:982439‑M2/146‑1 (MQ=255)                                                                                                                                                      cgccgACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCcca                                                                                     >  1:960/1‑63 (MQ=255)                                                                                                                                                      cgccgACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCcca                                                                                     <  2:960/63‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                  GCCTTTCTTGCGCAGCATCTGTGTCACGGTCAGCACCAGGTCAGTGGCAGTGATGCCCTCCCGCAGCTTGCCGGTCAGCTTGAAGCCGATCACTTCGGGGATCAGCATCGATACCGGCTGGCCGAGCATGGCCGCTTCCGCTTCGATGCCGCCGACACCCCAGCCGAGTACGCCCAGGCCGTTGATCATGGTGGTGTGCGAGTCTGTGCCCACCAAGGTATCGGGGAAGGCATAGGTGCGGCCGTCGGCCTCACGGGTCCACACCGTGCGGCCCAGGTATTCCAGGTTGACCTGG  >  NC_002947/2410654‑2410948

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.