| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3581719 | 52 (0.990) | 4 (0.080) | 4/228 | NT | 7.3% | coding (772/942 nt) | PP_3160 | hypothetical protein |
| ? | NC_002947 | = 3581735 | 53 (1.090) | coding (788/942 nt) | PP_3160 | hypothetical protein | |||||
ACACGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCTGAAGTTACCGAAAAAGTACCGAACATCCGT > NC_002947/3581589‑3581877 | acacGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCccg < 2:1405426‑M2/150‑4 (MQ=255) cacGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCccgg > 1:553895‑M2/1‑146 (MQ=255) acGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCccggg < 2:251339‑M2/150‑6 (MQ=255) aaaCCAATCGTGGCACCCAAATGACCTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACTTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATAGCa < 2:494335/150‑1 (MQ=255) aaTCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCaggagg < 1:1017843/150‑1 (MQ=255) ggCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTaa < 1:1073118/150‑1 (MQ=255) ggCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTaa < 1:237202/150‑1 (MQ=255) ggCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTATGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTaa < 1:933103/150‑1 (MQ=255) aCCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAACACACTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTa > 2:405448/1‑150 (MQ=255) cGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATg < 2:490119/150‑1 (MQ=255) cGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGAt < 2:48589/150‑1 (MQ=255) tAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGac > 2:130665/1‑150 (MQ=255) aaGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGacac > 1:232715/1‑150 (MQ=255) gctgctGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTa < 2:843505/150‑1 (MQ=255) tgctgGTTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAATCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGc > 1:638168/1‑150 (MQ=255) ctggctggTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTg > 1:1051272/1‑150 (MQ=255) tggTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCaaaa < 1:1405426/150‑1 (MQ=255) cAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATc < 1:972468/108‑1 (MQ=255) cAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATc > 2:972468/1‑108 (MQ=255) cAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGAttt > 1:488987/1‑150 (MQ=255) aaaGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAgg < 2:1330060/145‑1 (MQ=255) aaaGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAgg > 1:1330060/1‑145 (MQ=255) aaaGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGAtttt < 1:251339/150‑1 (MQ=255) aaTCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGt > 2:763356/1‑150 (MQ=255) tCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGa < 2:1351460/150‑1 (MQ=255) ttttAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATgg < 1:614818/100‑1 (MQ=255) ttttAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATgg > 2:614818/1‑100 (MQ=255) ttttAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGtt < 1:605504/103‑1 (MQ=255) ttttAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGtt > 2:605504/1‑103 (MQ=255) ttttAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGt < 2:167367/102‑1 (MQ=255) ttttAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGt > 1:167367/1‑102 (MQ=255) aaCCTCGCTGGAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTc < 1:853258/150‑1 (MQ=255) cTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGaa < 2:232715/150‑1 (MQ=255) gTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCccggga > 2:605320‑M2/1‑47 (MQ=255) gTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCccggga < 1:605320‑M2/53‑7 (MQ=255) gTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATc < 2:1015274/94‑1 (MQ=255) gTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATc > 1:1015274/1‑94 (MQ=255) aaGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAg > 2:1111081/1‑71 (MQ=255) aaGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAg < 1:1111081/71‑1 (MQ=255) gCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAgttgtt < 2:592266/135‑1 (MQ=255) gCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAgttgtt > 1:592266/1‑135 (MQ=255) cTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTc < 1:763356/150‑1 (MQ=255) cTTTAAGAAGTAACGTCTCCCGGTGGATGCCCAAGCGTCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTc > 2:415169/1‑150 (MQ=255) tttGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCaaaa < 2:204568/105‑1 (MQ=255) tttGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCaaaa > 1:204568/1‑105 (MQ=255) tttGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGc < 1:419063/121‑1 (MQ=255) tttGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGc > 2:419063/1‑121 (MQ=255) tttGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACAACTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCt > 1:729463/1‑150 (MQ=255) gagaAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCTGaa < 1:130665/150‑1 (MQ=255) gagaAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCTGaa < 1:762683/150‑1 (MQ=255) gaAGGAACGTCTCCCGGTGGATGCCCAAGCAGCccgggagacgttccttctcaaagtgctttacagccaggttaaaacgattcgctctgctttggaaccagccagcagctcgctttagtcgc < 1:917115‑M2/122‑90 (MQ=255) gaAGGAACGTCTCCCGGTGGATGCCCAAGCAGCccgggagacgttccttctcaaagtgctttacagccaggttaaaacgattcgctctgctttggaaccagccagcagctcgctttagtcgc > 2:917115‑M2/1‑33 (MQ=255) ggAACGTCTCCCGGTGGATGCCCAAGCAGCccgggagacgttccttctcaaagtgctttacagccaggttaaaacgattcgctctgctttggaaccagccagcagctcgctttagtcgctgtacgtcatttgggtgccacgattggtttc < 2:1152886‑M2/150‑121 (MQ=255) ggAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCTGAAGTTAc < 2:1051272/150‑1 (MQ=255) gAACGTCTCCCGGTGGATGCCCAAGCAGCccgggagacgttccttctcaaagtgctttacagccaggttaaaacgattcgctctgctttggaaccagccagcagctcgctttagtcgctgtacgtaatatgggtgcagcgattggtgtct < 2:969427‑M2/150‑122 (MQ=255) gAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCTGAAGTTAcc < 2:488987/150‑1 (MQ=255) tcCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACCCATGGTCGCGAAAAAAGGGGTGTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCTGAAGTTACCGAAAAAg > 1:1390747/1‑150 (MQ=255) gTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCTGAAGTTACCGAAAAAGTACCg > 2:459271/1‑150 (MQ=255) cccAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCTGAAGTTACCGAAAAAGTACCGAACATcc < 1:405448/150‑1 (MQ=255) cAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCTGAAGTTACCGAAAAAGTAc > 1:1169172/1‑139 (MQ=255) cAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCTGAAGTTACCGAAAAAGTAc < 2:1169172/139‑1 (MQ=255) cAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCTGAAGTTACCGAAAAAGTACCGAACATCCGt > 1:22051/1‑150 (MQ=255) | ACACGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCTGAAGTTACCGAAAAAGTACCGAACATCCGT > NC_002947/3581589‑3581877 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |