New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4160896 | 46 (0.880) | 10 (0.200) | 8/232 | NT | 19.3% | coding (1205/1302 nt) | PP_3663 | GGDEF domain‑containing protein |
? | NC_002947 | = 4160919 | 40 (0.810) | coding (1182/1302 nt) | PP_3663 | GGDEF domain‑containing protein |
ATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTCCCCAGTTCCATGACCCGTTCACTGCTCGCGCCACTGAGCAAGATGAC > NC_002947/4160770‑4161062 | aTGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCggcggc > 2:813432/1‑150 (MQ=255) aTGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCggcggc > 1:948448/1‑150 (MQ=255) aTGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCggcggc > 2:40646/1‑150 (MQ=255) aaGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCtgat < 1:1274646‑M2/150‑5 (MQ=255) ccccACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAaca > 1:828297/1‑150 (MQ=255) cccACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTCTGGACTGGTACAACGCCACATCCCCCTGCTCGATCACCTCCGCCAGGCTCGCCGGCGGCTGATCGAacac < 1:1112784/150‑1 (MQ=255) cTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTgg > 1:301324/1‑150 (MQ=255) aGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGaa > 1:1174302/1‑140 (MQ=255) aGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGaa < 2:1174302/140‑1 (MQ=255) aGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCa < 2:325851/150‑1 (MQ=255) gTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCtgatc > 2:1269296‑M2/1‑130 (MQ=255) gTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCtgatc < 1:1269296‑M2/135‑6 (MQ=255) aCTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAAt < 2:499380/150‑1 (MQ=255) tCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGc > 1:287435/1‑150 (MQ=255) cACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAg < 2:948448/150‑1 (MQ=255) aCTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAgg > 2:378093/1‑150 (MQ=255) ttCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTg > 2:1044724/1‑150 (MQ=255) cAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTggg < 1:166359/150‑1 (MQ=255) accGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTa < 2:564209/150‑1 (MQ=255) cgcccgcTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAgg < 2:119669/150‑1 (MQ=255) cgcTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTAACACGCTACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGcaca < 2:38206/150‑1 (MQ=255) cTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCt < 1:19499‑M2/95‑2 (MQ=255) cTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCt > 2:19499‑M2/1‑94 (MQ=255) tCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTc < 2:1274646/150‑1 (MQ=255) gAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCtt < 1:378093/150‑1 (MQ=255) aaaCCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTc < 1:813432/150‑1 (MQ=255) ccGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGc > 2:1003516/1‑150 (MQ=255) ccGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGc > 2:580484/1‑150 (MQ=255) gAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTg > 1:145863/1‑124 (MQ=255) gAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTg < 2:145863/124‑1 (MQ=255) cTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTActgc < 2:287435/150‑1 (MQ=255) cTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTActgc > 1:71269/1‑150 (MQ=255) gTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTActgctg < 1:934213/150‑1 (MQ=255) tCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTgg < 1:1044724/150‑1 (MQ=255) gcCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGt > 1:234006/1‑127 (MQ=255) gcCCCCAACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGt < 2:234006/127‑1 (MQ=255) tGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGcc < 1:1003516/150‑1 (MQ=255) tGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGcc < 1:40646/150‑1 (MQ=255) tGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTc < 2:71269/150‑1 (MQ=255) gTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTccc > 1:1140020/1‑150 (MQ=255) cAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTCCCCAg > 1:914426/1‑150 (MQ=255) aaCGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTCCCCAGt > 2:432692/1‑150 (MQ=255) aaCGCCACACCCCCCTGCTCGACCAAAGCCGCCAGGCTCGCCGGCGGCTGATCGATTACGTGGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTCCCCAGt > 2:15429/1‑150 (MQ=255) cacaTCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTCCCCAGTTCCAt < 2:828297/150‑1 (MQ=255) cccTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCaa > 2:1234296/1‑65 (MQ=255) cccTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCaa < 1:1234296/65‑1 (MQ=255) gCTCGATCAACGCCGCCAGGCTCGCCGGCGGCtgatcgagcagggggatgtggcgttgtaccagtccaaacgtggggggcgcgacagcattcggtttttcgagcgggcggtggttgaactccggcagtgagcgagtcacctaggtggggg < 1:594971‑M2/150‑119 (MQ=255) gATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTCCCCAGTTCCATGACCCGTTCACTGCt > 2:335011/1‑150 (MQ=255) aTCAACGCCGCCAGGCTCGCCGGCGGCtgatcgagcagggggatgtggcgttgtaccagtccaaacgtggggggcgcgacagcattcggtttttcgagcgggcggtggtt > 1:74201‑M2/1‑27 (MQ=255) aTCAACGCCGCCAGGCTCGCCGGCGGCtgatcgagcagggggatgtggcgttgtaccagtccaaacgtggggggcgcgacagcattcggtttttcgagcgggcggtggtt < 2:74201‑M2/110‑84 (MQ=255) aTCAACGCCGCCAGGCTCGCCGGCGGCtgatcgagcagggggatgtg > 1:445660‑M2/1‑27 (MQ=255) aTCAACGCCGCCAGGCTCGCCGGCGGCtgatcgagcagggggatgtg < 2:445660‑M2/47‑21 (MQ=255) aTCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGTTCACGCAGCTCACCCCCCTCTACCGTGACCCGTTcgccgatc > 2:261291/1‑143 (MQ=255) aTCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTCCCCAGTTCCATGACCCGTTCACTGCTc < 2:914426/150‑1 (MQ=255) aCGCCGCCAGGCTCGCCGGCGGCgttgatcgagcagggggatgtggcgttgtaccagtccaaacgtggggggcgcgacagcattcggtttttcgagcgggcggtggttgaactccg > 1:664144‑M2/1‑23 (MQ=255) aCGCCGCCAGGCTCGCCGGCGGCgttgatcgagcagggggatgtggcgttgtaccagtccaaacgtggggggcgcgacagcattcggtttttcgagcgggcggtggttgaactccg < 2:664144‑M2/116‑94 (MQ=255) gccAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTCCCCAGTTCCATGACCCGTTCACTGCTCGCGCCACTg > 1:1035764/1‑150 (MQ=255) gCTCGCCGGCGGCtgatcgaacagggggatgtggcgttgtaccagtccaaacgtggggggcgcgacagcattcggtttttcgagcgggcggtggttgaactccg > 1:972140‑M2/1‑13 (MQ=255) gCTCGCCGGCGGCtgatcgaacagggggatgtggcgttgtaccagtccaaacgtggggggcgcgacagcattcggtttttcgagcgggcggtggttgaactccg < 2:972140‑M2/104‑92 (MQ=255) cTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTCCCCAGTTCCATGACCCGTTCACTGCTCGCGCCACTGAGCAAg > 1:822160/1‑150 (MQ=255) tCGCCGGCGGCtgatcgagcagggggatgtggcgttgtaccagtccaaacgtggggggcgcgacagcattcggtttttcgagcgggcggtggttgaactccggcagtgagcgagtcacctaggtgggggagctttcatgtaacccatgtg > 2:594971‑M2/1‑11 (MQ=255) gggcggcGGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCGTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCATGCAGCCCACTCCCCGGTTCCATGACCCGTTCACTGCTCGCGCCACTGAGCAAGATGAc < 2:301324/149‑1 (MQ=255) ggcTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTCCCCAGTTCCAt > 2:545830/1‑110 (MQ=255) ggcTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTCCCCAGTTCCAt < 1:545830/110‑1 (MQ=255) | ATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCAGGCTCGCCGGCGGCTGATCGAACACGTTGGCACCAATGCTCAAGGTAACCGCCTGGGGCGTAGGCACAGTCTTGTCGGCGTACTGCTGGAACTGCTCACGCAGCCCACTCCCCAGTTCCATGACCCGTTCACTGCTCGCGCCACTGAGCAAGATGAC > NC_002947/4160770‑4161062 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |