New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	447203 =	36 (1.140)	4 (0.160)	4/202	NT	13.7%	intergenic (+80/‑222)	PP_0368/PP_0369	acyl‑CoA dehydrogenase/diguanylate cyclase
	?	NC_002947	447307 =	21 (0.810)					intergenic (+184/‑118)	PP_0368/PP_0369	acyl‑CoA dehydrogenase/diguanylate cyclase

TGCACTGGAACAGTTGAATTTGCGGTTGGATGAACGAACTTCCGGCCGCCACGCGAGCCTTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/447367‑447203 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCACTGCCGATGAAGTGAGGGCACAATGCCATTATTGATCTGCCGGGTTGGAGATTACCCTTGTTTCGTCTTAACGCT  >  NC_002947/447307‑447442                                                                                                                                                                                                                                                                                                               TGCACTGGAACAGTTGAATTTGCGGTTGGATGAACGAACTTCCGGCCGCCACGCGAGCCTTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGG                                                                                                                                                         >  1:509758/1‑150         AACAGTTGAATTTGCGGTTGGATGAACGAACTTCCGGCCGCCACGCGAGCCTTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCG                                                                                                                                                 >  1:123972/1‑150              TTGAATTTGCGGTTGGATGCACGAACTTCCGGCCGCCACGCGAGCCTTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCT                                                                                                                                            >  1:244303/1‑150              TTGAATTTGCGGTTGGATGAACGAACTTCCGGCCGCCACGCGAGCCTTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCT                                                                                                                                            >  2:493349/1‑150                GAATTTGCGGTTGGATGAACGAACTTCCGGCCGCCACGCGAGCCTTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC                                                                                                                                          <  1:513716/150‑1                                                                    GCGGGTTTACCCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAAC                                                                                                     <  1:601417/135‑1                                                                    GCGGGTTTACCCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAAC                                                                                                     >  2:601417/1‑135                                                                              CCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCAC                                                                            >  1:65361/1‑150                                                                                               CTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCACTGCCGATGAAGTGAGGG                                                           <  2:65361/150‑1                                                                                                                                                        AAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCACTGCCGATGAAGTGAGGGCACAATGCCATTATTGATCTGCCGGGTTGGAGATTACCCTTGTTTCGTCTTAACGCT  <  1:784570/150‑1                                                                                                                                                                                                                                                                                                               TGCACTGGAACAGTTGAATTTGCGGTTGGATGAACGAACTTCCGGCCGCCACGCGAGCCTTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/447367‑447203 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCACTGCCGATGAAGTGAGGGCACAATGCCATTATTGATCTGCCGGGTTGGAGATTACCCTTGTTTCGTCTTAACGCT  >  NC_002947/447307‑447442

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.