New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	447203 =	36 (1.140)	4 (0.160)	4/202	NT	13.7%	intergenic (+80/‑222)	PP_0368/PP_0369	acyl‑CoA dehydrogenase/diguanylate cyclase
	?	NC_002947	447307 =	21 (0.810)					intergenic (+184/‑118)	PP_0368/PP_0369	acyl‑CoA dehydrogenase/diguanylate cyclase

GCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTC  >  NC_002947/447055‑447352                                                                                                                                                     |                                                                                                                                                       gCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCAGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGt                                                                                                                                                       >  1:226004/1‑150 (MQ=255)      cATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAg                                                                                                                                                  <  2:300038/150‑1 (MQ=255)             agcgttaagacgaaacaagggtaatctccaacccggcagatcaataatggcattgtgccctcacttcatcggcagtgcactggaacagttgaatttgcggttggatgaacgaacttccggccgccacgcgagccttGTAGGAGCGGGttt                                                                                                                                           <  1:784570‑M1/14‑1 (MQ=255)                            cTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAggcc                                                                                                                            >  2:500107/1‑150 (MQ=255)                             tGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAaga                                                                                                                                >  2:522028/1‑145 (MQ=255)                             tGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAaga                                                                                                                                <  1:522028/145‑1 (MQ=255)                             tGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAggccg                                                                                                                           >  2:20130/1‑150 (MQ=255)                                          cGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCTCTCGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCCCTGCTAGccc                                                                                                              >  2:148475/1‑149 (MQ=255)                                          cGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGGTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑a                                                                                                             >  1:178691/1‑150 (MQ=255)                                              gagCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGc                                                                                                                >  1:701383/1‑144 (MQ=255)                                              gagCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGc                                                                                                                <  2:701383/144‑1 (MQ=255)                                                        gCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCg                                                                                               >  2:303248/1‑150 (MQ=255)                                                            gTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCa                                                                                           <  1:20130/150‑1 (MQ=255)                                                            gTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCa                                                                                           <  2:104162/150‑1 (MQ=255)                                                             tCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGc                                                                                                                >  1:763407/1‑129 (MQ=255)                                                             tCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGc                                                                                                                <  2:763407/129‑1 (MQ=255)                                                                   tGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGc                                                                                    >  1:424616/1‑150 (MQ=255)                                                                   tGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGc                                                                                    <  2:424616/150‑1 (MQ=255)                                                                      ccctcacttcatcggcagtgcactggaacagttgaatttgcggttggatgaacgaacttccggccgccacgcgagccttGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAg                                                                                 <  2:65361‑M1/71‑1 (MQ=255)                                                                          ggCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCt                                                                             >  1:739686/1‑150 (MQ=255)                                                                           gcgcTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTa                                                                            <  2:739686/150‑1 (MQ=255)                                                                                       gtgcactggaacagttgaatttgcggttggatgaacgaacttccggccgccacgcgagccttGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCgg                                                                >  1:65361‑M1/63‑150 (MQ=255)                                                                                                tGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCg                                                       >  1:80136/1‑150 (MQ=255)                                                                                                  cccTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAAATCTCCATCAGCCGtt                                                                                             <  2:138049/111‑1 (MQ=255)                                                                                                  cccTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCt                                                     >  1:266738/1‑150 (MQ=255)                                                                                                  cccTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGGTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAAATCTCCATCAGCCGtt                                                                                             >  1:138049/1‑111 (MQ=255)                                                                                                       aCCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTAc                                                >  2:625653/1‑150 (MQ=255)                                                                                                         gggcaGGCGGGCTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACaa                                              <  2:470128/146‑1 (MQ=255)                                                                                                         cGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACaa                                              <  2:80136/150‑1 (MQ=255)                                                                                                               gCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTcg                                        >  2:509758/1‑150 (MQ=255)                                                                                                                gttggatgaacgaacttccggccgccacgcgagccttGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGc                                                      <  1:601417‑M1/98‑1 (MQ=255)                                                                                                                gttggatgaacgaacttccggccgccacgcgagccttGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGc                                                      >  2:601417‑M1/38‑135 (MQ=255)                                                                                                                  ggTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGtt                                                                                      >  1:167484/1‑101 (MQ=255)                                                                                                                  ggTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGtt                                                                                      <  2:167484/101‑1 (MQ=255)                                                                                                                   gTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTg                                    >  1:568711/1‑150 (MQ=255)                                                                                                                     tttttACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTggc                                  <  2:740756/150‑1 (MQ=255)                                                                                                                                      tCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCa                 >  2:123972/1‑150 (MQ=255)                                                                                                                                      tCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCAAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTc                                         <  2:282783/126‑1 (MQ=255)                                                                                                                                      tCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCAAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTc                                         >  1:282783/1‑126 (MQ=255)                                                                                                                                      tCAGCGTGGCCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCa                 <  1:148475/150‑1 (MQ=255)                                                                                                                                        aGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTTGCGGCCGGAAGTTCGTGCATc               <  2:178691/150‑1 (MQ=255)                                                                                                                                         gCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATcc              <  2:657564/150‑1 (MQ=255)                                                                                                                                                 ccTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTCCAGTATTCGAGGGTAAACCCGCTCCTACTAGTCTCGCTTGGGGTCCTTAAGTGCGTTCATCCAACCGCaa      <  2:226004/150‑1 (MQ=18)                                                                                                                                                 ccTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAgttcgt                    <  1:303035/136‑1 (MQ=255)                                                                                                                                                 ccTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAgttcgt                    >  2:303035/1‑136 (MQ=255)                                                                                                                                                    cGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAAtt   <  1:500107/150‑1 (MQ=255)                                                                                                                                                     GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTc  <  1:513716‑M1/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                       GCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCC‑AATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTC  >  NC_002947/447055‑447352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.