New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	447203 =	36 (1.140)	4 (0.160)	4/202	NT	13.7%	intergenic (+80/‑222)	PP_0368/PP_0369	acyl‑CoA dehydrogenase/diguanylate cyclase
	?	NC_002947	447307 =	21 (0.810)					intergenic (+184/‑118)	PP_0368/PP_0369	acyl‑CoA dehydrogenase/diguanylate cyclase

CGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCACTGCCGATGAAGTGAGGGCACAATGCCATTATTGATCTGCCGGGTTGGAGATTACCCTTGTTTCGTCTTAACGCT  >  NC_002947/447159‑447442                                                                                                                                                     |                                                                                                                                        gggcaGGCGGGCTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACaa                                                                                                                                        <  2:470128/146‑1 (MQ=255) cGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACaa                                                                                                                                        <  2:80136/150‑1 (MQ=255)       gCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTcg                                                                                                                                  >  2:509758/1‑150 (MQ=255)           gTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTg                                                                                                                              >  1:568711/1‑150 (MQ=255)             tttttACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTggc                                                                                                                            <  2:740756/150‑1 (MQ=255)                              tCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCa                                                                                                           >  2:123972/1‑150 (MQ=255)                              tCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCAAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTc                                                                                                                                   >  1:282783/1‑126 (MQ=255)                              tCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCAAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTc                                                                                                                                   <  2:282783/126‑1 (MQ=255)                              tCAGCGTGGCCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCa                                                                                                           <  1:148475/150‑1 (MQ=255)                                aGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTTGCGGCCGGAAGTTCGTGCATc                                                                                                         <  2:178691/150‑1 (MQ=255)                                 gCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATcc                                                                                                        <  2:657564/150‑1 (MQ=255)                                         ccTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTCCAGTATTCGAGGGTAAACCCGCTCCTACTAGTCTCGCTTGGGGTCCTTAAGTGCGTTCATCCAACCGCaa                                                                                                <  2:226004/150‑1 (MQ=18)                                         ccTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAgttcgt                                                                                                              >  2:303035/1‑136 (MQ=255)                                         ccTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAgttcgt                                                                                                              <  1:303035/136‑1 (MQ=255)                                            cGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAAtt                                                                                             <  1:500107/150‑1 (MQ=255)                                             GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTc                                                                                            <  1:513716‑M1/150‑1 (MQ=255)                                               AGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCaa                                                                                          >  2:493349‑M1/1‑150 (MQ=255)                                               AGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTGCATCCAACCGCAAATTCaa                                                                                          >  1:244303‑M1/1‑150 (MQ=255)                                                   gcgggtttacccgcgaatacggtagcgctggcaacggtgaacggctgatggagattggccagcagggccggcctcttcgcgggtaaacccgctcctacAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAAc                                                                                                     >  2:601417‑M2/99‑135 (MQ=255)                                                   gcgggtttacccgcgaatacggtagcgctggcaacggtgaacggctgatggagattggccagcagggccggcctcttcgcgggtaaacccgctcctacAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAAc                                                                                                     <  1:601417‑M2/37‑1 (MQ=255)                                                    CGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGtt                                                                                     >  1:123972‑M1/1‑150 (MQ=255)                                                            CCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCa                                                                             >  1:509758‑M1/1‑150 (MQ=255)                                                             ccgcgaatacggtagcgctggcaacggtgaacggctgatggagattggccagcagggccggcctcttcgcgggtaaacccgctcctacAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCAc                                                                            >  1:65361‑M2/89‑150 (MQ=255)                                                                              ctggcaacggtgaacggctgatggagattggccagcagggccggcctcttcgcgggtaaacccgctcctacAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCACTGCCGATGAAGTGAggg                                                           <  2:65361‑M2/79‑1 (MQ=255)                                                                                      cAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCACTGCCGATGAAGTGAgg                                                            <  2:21181/141‑1 (MQ=255)                                                                                      cAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCACTGCCGATGAAGTGAgg                                                            >  1:21181/1‑141 (MQ=255)                                                                                      cAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCACTGCCGATGAAGTGAGGGCACAATGc                                                   >  2:784570/1‑150 (MQ=255)                                                                                       aaTCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCACTGCCGATGAAGTGAGGGCACAATGcc                                                  <  1:303248/150‑1 (MQ=255)                                                                                               tCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCACTGCCGATGAAGTGAg                                                             >  2:758257/1‑131 (MQ=255)                                                                                               tCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCACTGCCGATGAAGTGAg                                                             <  1:758257/131‑1 (MQ=255)                                                                                                                  aGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCACTGCCGATGAAGTGAGGGCACAATGCCATTATTGATCTGCCGGGTTGGAGATTa                       <  1:625653/150‑1 (MQ=255)                                                                                                                       tACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCACTGCCGATGAAGTGAGGGCACAATGCCATTATTGATCTGCCGGGTTGGAGATTACCCtt                  >  1:163348/1‑150 (MQ=255)                                                                                                                           gTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCACTGCCGATGAAGTGAGGGCACAATGCCATTATTGAt                                         >  1:634067/1‑123 (MQ=255)                                                                                                                           gTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCACTGCCGATGAAGTGAGGGCACAATGCCATTATTGAt                                         <  2:634067/123‑1 (MQ=255)                                                                                                                                       aaacccgctcctacAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCACTGCCGATGAAGTGAGGGCACAATGCCATTATTGATCTGCCGGGTTGGAGATTACCCTTGTTTCGTCTTAACGCt  <  1:784570‑M2/136‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                        CGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGCGGCCGGAAGTTCGTTCATCCAACCGCAAATTCAACTGTTCCAGTGCACTGCCGATGAAGTGAGGGCACAATGCCATTATTGATCTGCCGGGTTGGAGATTACCCTTGTTTCGTCTTAACGCT  >  NC_002947/447159‑447442

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.