New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	521072 =	28 (0.880)	3 (0.100)	3/234	NT	9.3%	coding (227/1092 nt)	anmK	anhydro‑N‑acetylmuramic acid kinase
	?	NC_002947	521118 =	32 (1.070)					coding (181/1092 nt)	anmK	anhydro‑N‑acetylmuramic acid kinase

AGCAGCTTGAACTGCTCGCCACCCACTACCTGCCCATGCCCCCGGACCTGCGCCAGGACCTGCTGGCCCTGTGCAGCAGCGGCCCTGACGAGATTGCCCGTGCAGCACTGGCGGAAAACCGCTGGGCCAGCCTGGCCGGCGAAGGTATCCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/521225‑521072 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccgccaGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCT  >  NC_002947/521118‑521265                                                                                                                                                                                                                                                                                                                AGCAGCTTGAACTGCTCGCCACCCACTACCTGCCCATGCCCCCGGACCTGCGCCAGGACCTGCTGGCCCTGTGCAGCAGCGGCCCTGACGAGATTGCCCGTGCAGCACTGGCGGAAAACCGCTGGGCCAGCCTGGCCGGCGAAGGTATCC                                                                                                                                                          <  1:391881/150‑1  GCAGCTTGAACTGCTCGCCACCCACTACCTGCCCATGCCCCCGGACCTGCGCCAGGACCTGCTGGCCCTGTGCAGCAGCGGCCCTGACGAGATTGCCCGTGCAGCACTGGCGGAAAACCGCTGGGCCAGCCTGGCCGGCGAAGGTATCCG                                                                                                                                                         <  2:218159/150‑1                                                                                                             TGGCGGAAAACCGCTGGGCCAGCCTGGCCGGCGAAGGTATCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGC                                              >  2:362815/1‑150                                                                                                               GCGGAAAACCGCTGGGCCAGCCTGGCCGGCGAAGGTATCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGG                                                                                              >  1:377187/1‑100                                                                                                               GCGGAAAACCGCTGGGCCAGCCTGGCCGGCGAAGGTATCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGG                                                                                              <  2:377187/100‑1                                                                                                                                                       GCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGACTTGTTCGAGCAGGGCGATATTCAGGCCATCGAGG    >  1:260484/1‑150                                                                                                                                                         CAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCT  >  2:151832/1‑150                                                                                                                                                                                                                                                                                                                AGCAGCTTGAACTGCTCGCCACCCACTACCTGCCCATGCCCCCGGACCTGCGCCAGGACCTGCTGGCCCTGTGCAGCAGCGGCCCTGACGAGATTGCCCGTGCAGCACTGGCGGAAAACCGCTGGGCCAGCCTGGCCGGCGAAGGTATCCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/521225‑521072 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccgccaGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCT  >  NC_002947/521118‑521265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.