New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	521072 =	28 (0.880)	3 (0.100)	3/234	NT	9.3%	coding (227/1092 nt)	anmK	anhydro‑N‑acetylmuramic acid kinase
	?	NC_002947	521118 =	32 (1.070)					coding (181/1092 nt)	anmK	anhydro‑N‑acetylmuramic acid kinase

GTAAAGCCGCGGGCCGGTTCATGGCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCT  >  NC_002947/520979‑521265                                                                                                                                            |                                                                                                                                                    gTAAAGCCGCGGGCCGGTTCATGGCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACgg                                                                                                                                           <  1:521300/150‑1 (MQ=255) gTAAAGCCGCGGGCCGGTTCATGGCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACgg                                                                                                                                           <  1:376082/150‑1 (MQ=255)    aaGCCGCGGGCCGGTTCATGGCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCaagatcg                                                                                                                                        >  1:398160/1‑144 (MQ=255)       ccGCGGGCCGGTTCATGGCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAATGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAAtc                                                                                                                                     >  1:214728/1‑150 (MQ=255)                     aTGGCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCgct                                                                                                                       >  1:610049/1‑150 (MQ=255)                     aTGGCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCgct                                                                                                                       >  1:209996/1‑150 (MQ=255)                       ggCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCgctgc                                                                                                                     >  1:310591/1‑150 (MQ=255)                                tCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAggg                                                                                                            >  2:124206/1‑150 (MQ=255)                                tCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAggg                                                                                                            <  2:209996/150‑1 (MQ=255)                                            tGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGtgct                                                                                                                                                 <  2:684609/101‑1 (MQ=255)                                            tGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGtgct                                                                                                                                                 >  1:684609/1‑101 (MQ=255)                                             gCCGATGGCGCGAATGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTg                                                                                               <  2:214728/150‑1 (MQ=255)                                                  tGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCa                                                                                          <  2:125010/150‑1 (MQ=255)                                                     cgcgAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCCGATACCTTCACCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGt                                                                                       >  1:199190/1‑150 (MQ=255)                                                        gAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAAt                                                                                                                                      <  2:241129/100‑1 (MQ=255)                                                        gAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAAt                                                                                                                                      >  1:241129/1‑100 (MQ=255)                                                               ttCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCAt                                                                             >  1:46953/1‑150 (MQ=255)                                                               ttCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCAt                                                                             >  1:579220/1‑150 (MQ=255)                                                                      ttCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAgg                                                                      <  2:579220/150‑1 (MQ=255)                                                                      ttCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAgg                                                                      >  1:176996/1‑150 (MQ=255)                                                                         aGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAg                                                                   >  2:176341/1‑150 (MQ=255)                                                                             ccTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATgg                                                                           <  2:563305/138‑1 (MQ=255)                                                                             ccTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATgg                                                                           >  1:563305/1‑138 (MQ=255)                                                                              cTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAACCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAgtgggt                                                              <  2:155650/150‑1 (MQ=255)                                                                                   gAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGa                                                         <  2:310591/150‑1 (MQ=255)                                                                                             ttGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAg                                               <  1:176341/150‑1 (MQ=255)                                                                                              tggcggaaaaccgctgggccagcctggccggcgaaggtatccgccaGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAgc                                              >  2:362815‑M2/47‑150 (MQ=255)                                                                                                gcggaaaaccgctgggccagcctggccggcgaaggtatccgccaGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTgg                                                                                              <  2:377187‑M2/56‑1 (MQ=255)                                                                                                gcggaaaaccgctgggccagcctggccggcgaaggtatccgccaGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTgg                                                                                              >  1:377187‑M2/45‑100 (MQ=255)                                                                                                 CGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAgctgc                                           <  2:218159‑M1/150‑1 (MQ=255)                                                                                                  GGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAgctgct                                          <  1:391881‑M1/150‑1 (MQ=255)                                                                                                        cTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCtt                                    >  1:694356/1‑150 (MQ=255)                                                                                                         ttCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCgg                                                                                   >  1:500790/1‑102 (MQ=255)                                                                                                         ttCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCgg                                                                                   <  2:500790/102‑1 (MQ=255)                                                                                                         ttCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTg                                   >  2:638299/1‑150 (MQ=255)                                                                                                                gCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGGTCAAGCTGCTCGCCTTGTTCGAcc                            >  2:835860/1‑150 (MQ=255)                                                                                                                       tGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGa                     >  1:224082/1‑150 (MQ=255)                                                                                                                             aGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCa               <  2:176996/150‑1 (MQ=255)                                                                                                                              gCGGTTTTCCGCCAGTCCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAg              <  1:17337/150‑1 (MQ=255)                                                                                                                                ggTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGc            <  2:694356/150‑1 (MQ=255)                                                                                                                                  ttttCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCa          >  1:549696/1‑150 (MQ=255)                                                                                                                                        gccaGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGACTTGTTCGAGCAGGGCGATATTCAGGCCATCGAgg    >  1:260484‑M2/5‑150 (MQ=255)                                                                                                                                          caGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCt  >  2:151832‑M2/3‑150 (MQ=255)                                                                                                                                            |                                                                                                                                                    GTAAAGCCGCGGGCCGGTTCATGGCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAGCTGCTCGCCTTGTTCGACCAGGGCGATATCCAGGCCATCGAGGCT  >  NC_002947/520979‑521265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.