New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	521072 =	28 (0.880)	3 (0.100)	3/234	NT	9.3%	coding (227/1092 nt)	anmK	anhydro‑N‑acetylmuramic acid kinase
	?	NC_002947	521118 =	32 (1.070)					coding (181/1092 nt)	anmK	anhydro‑N‑acetylmuramic acid kinase

GACCACGCTGATGCCGGTCAGTTCGGCGAGCAGTGCGGGGTTACCGATCTGCACAGTAAAGCCGCGGGCCGGTTCATGGCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAG  >  NC_002947/520924‑521220                                                                                                                                                     |                                                                                                                                                     agcctcgatggcctggatatcgccctggtcgaacaaggcgagcagcttgaactgctcgccacccactacctgcccatgcccccggacctgcgccaggacctgctggccctgtgcagcagcggccctgacgagattgcccgtgcagcacTg                                                                                                                                                     >  2:151832‑M1/149‑150 (MQ=255)   cctcgatggcctgaatatcgccctgctcgaacaagtcgagcagcttgaactgctcgccacccactacctgcccatgcccccggacctgcgccaggacctgctggccctgtgcagcagcggccctgacgagattgcccgtgcagcacTGGc                                                                                                                                                   >  1:260484‑M1/147‑150 (MQ=255)                ggTCAGTTCGGCGAGCAGTGCGGGGTTACCGATCTGCACAGTAAAGCCGCGGGCCGGTTCATGGCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGcc                                                                                                                                      >  2:414784/1‑150 (MQ=255)                 gTCAGTTCGGCGAGCAGTGCGGGGTTACCGATCTGCACAGTAAAGCCGCGGGCCGGTTCATGGCGAATGGTCTGGCCGTGGCTGCAGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCg                                                                                                                                     >  1:102200/1‑150 (MQ=255)                                           aCCGATCTGCACAGTAAAGCCGCGGGCCGGTTCATGGCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGc                                                                                                           <  1:414784/150‑1 (MQ=255)                                             gcttgaactgctcgccacccactacctgcccatgcccccggacctgcgccaggacctgctggccctgtgcagcagcggccctgacgagattgcccgtgcagcacTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCa                                                                                                         >  2:362815‑M1/105‑150 (MQ=255)                                                        gTAAAGCCGCGGGCCGGTTCATGGCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACgg                                                                                              <  1:376082/150‑1 (MQ=255)                                                        gTAAAGCCGCGGGCCGGTTCATGGCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACgg                                                                                              <  1:521300/150‑1 (MQ=255)                                                           aaGCCGCGGGCCGGTTCATGGCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCaagatcg                                                                                           >  1:398160/1‑144 (MQ=255)                                                              ccGCGGGCCGGTTCATGGCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAATGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAAtc                                                                                        >  1:214728/1‑150 (MQ=255)                                                                            aTGGCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCgct                                                                          >  1:209996/1‑150 (MQ=255)                                                                            aTGGCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCgct                                                                          >  1:610049/1‑150 (MQ=255)                                                                              ggCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCgctgc                                                                        >  1:310591/1‑150 (MQ=255)                                                                                       tCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAggg                                                               <  2:209996/150‑1 (MQ=255)                                                                                       tCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAggg                                                               >  2:124206/1‑150 (MQ=255)                                                                                             ccaggacctgctggccctgtgcagcagcggccctgacgagattgcccgtgcagcacTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGc                                                                                                           >  1:377187‑M1/57‑100 (MQ=255)                                                                                             ccaggacctgctggccctgtgcagcagcggccctgacgagattgcccgtgcagcacTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGc                                                                                                           <  2:377187‑M1/44‑1 (MQ=255)                                                                                                   tGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGtgct                                                                                                    <  2:684609/101‑1 (MQ=255)                                                                                                   tGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGtgct                                                                                                    >  1:684609/1‑101 (MQ=255)                                                                                                    gCCGATGGCGCGAATGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTg                                                  <  2:214728/150‑1 (MQ=255)                                                                                                         tGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCa                                             <  2:125010/150‑1 (MQ=255)                                                                                                            cgcgAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCCGATACCTTCACCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGt                                          >  1:199190/1‑150 (MQ=255)                                                                                                               gAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAAt                                                                                         <  2:241129/100‑1 (MQ=255)                                                                                                               gAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAAt                                                                                         >  1:241129/1‑100 (MQ=255)                                                                                                                      ttCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCAt                                >  1:579220/1‑150 (MQ=255)                                                                                                                      ttCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCAt                                >  1:46953/1‑150 (MQ=255)                                                                                                                             ttCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAgg                         >  1:176996/1‑150 (MQ=255)                                                                                                                             ttCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAgg                         <  2:579220/150‑1 (MQ=255)                                                                                                                                aGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAg                      >  2:176341/1‑150 (MQ=255)                                                                                                                                    ccTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATgg                              >  1:563305/1‑138 (MQ=255)                                                                                                                                    ccTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATgg                              <  2:563305/138‑1 (MQ=255)                                                                                                                                     cTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAACCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAgtgggt                 <  2:155650/150‑1 (MQ=255)                                                                                                                                          gAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGa            <  2:310591/150‑1 (MQ=255)                                                                                                                                                    ttGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAg  <  1:176341/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GACCACGCTGATGCCGGTCAGTTCGGCGAGCAGTGCGGGGTTACCGATCTGCACAGTAAAGCCGCGGGCCGGTTCATGGCGAATGGTCTGGCCGTGGCTGCCGATGGCGCGAACGGCTTCGGGCTTCAGTCCCTGGCGAGCCAGCAGTTGGCGGATACCTTCGCCGGCCAGGCTGGCCCAGCGGTTTTCCGCCAGTGCTGCACGGGCAATCTCGTCAGGGCCGCTGCTGCACAGGGCCAGCAGGTCCTGGCGCAGGTCCGGGGGCATGGGCAGGTAGTGGGTGGCGAGCAGTTCAAG  >  NC_002947/520924‑521220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.