New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	832319 =	40 (1.260)	4 (0.130)	4/234	NT	10.3%	coding (79/1098 nt)	PP_0716	HlyD family secretion protein
	?	NC_002947	832385 =	32 (1.070)					coding (145/1098 nt)	PP_0716	HlyD family secretion protein

AGCACATCGCCCTGGCGCACCTCCTGGTTGTTGCCTACGGCCACACGCTTGATCTGCCCGGCCACTTCGGCGGCCACCGGGACTACGTAAGCCTGCAGGCGAGCTTGCTGGGTGTACGGCGTATAGCGGTCAGCCAGCAAGTACCAGAGCAGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/832473‑832319 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggctTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGC  >  NC_002947/832385‑832493                                                                                                                                                                                                                                                                          AGCACATCGCCCTGGCGCACCTCCTGGTTGTTGCCTACGGCCACACGCTTGATCTGCCCGGCCACTTCGGCGGCCACCGGGACTACGTAAGCCTGCAGGCGAGCTTGCTGGGTGTACGGCGTATAGCGGTCAGCCAGCAAGTACCAGAGC                                                                                                                    <  2:532094/150‑1     CATCGCCCTGGCGCACCTCCTGGTTGTTGCCTACGGCCACACGCTTGATCTGCCCGGCCACTTCGGCGGCCACCGGGACTACGTAAGCCTGCAGGCGAGCTTGCTGGGTGTACGGCGTATAGCGGTCAGCCAGCAAGTACCAGAGCAGGC                                                                                                                >  2:610477/1‑150                               TTGCCTACGGCCACACGCTTGATCTGCCCGGCCACTTCGGCGGCCACCGGGACTACGTAAGCCTGCAGGCGAGCTTGCTGGGTGTACGGCGTATAGCGGTCAGCCAGCAAGTACCAGAGCAG                                                                                                                  <  1:12413/122‑1                               TTGCCTACGGCCACACGCTTGATCTGCCCGGCCACTTCGGCGGCCACCGGGACTACGTAAGCCTGCAGGCGAGCTTGCTGGGTGTACGGCGTATAGCGGTCAGCCAGCAAGTACCAGAGCAG                                                                                                                  >  2:12413/1‑122                                                                                       GTAAGCCTGCAGGCGAGCTTGCTGGGTGTACGGCGTATAGCGGTCAGCCAGCAAGTACCAGAGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCTGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGC                              >  2:108041/1‑150                                                                                         AAGCCTGCAGGCGAGCTTGCTGGGTGTACGGCGTATAGCGGTCAGCCAGCAAGTACCAGAGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGA                                           <  2:91968/135‑1                                                                                         AAGCCTGCAGGCGAGCTTGCTGGGTGTACGGCGTATAGCGGTCAGCCAGCAAGTACCAGAGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAAACAGGA                                           >  1:91968/1‑135                                                                                                                   TACGGCGTATAGCGGTCAGCCAGCAAGTACCAGAGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCTGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGC  <  1:108041/150‑1                                                                                                                                                                                                                                                                          AGCACATCGCCCTGGCGCACCTCCTGGTTGTTGCCTACGGCCACACGCTTGATCTGCCCGGCCACTTCGGCGGCCACCGGGACTACGTAAGCCTGCAGGCGAGCTTGCTGGGTGTACGGCGTATAGCGGTCAGCCAGCAAGTACCAGAGCAGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/832473‑832319 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggctTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGC  >  NC_002947/832385‑832493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.