New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	832319 =	40 (1.260)	4 (0.130)	4/234	NT	10.3%	coding (79/1098 nt)	PP_0716	HlyD family secretion protein
	?	NC_002947	832385 =	32 (1.070)					coding (145/1098 nt)	PP_0716	HlyD family secretion protein

ACCGAATGAGCGACGCCACGCCAACGCCGCCCCCATCAGCCCCGGATCGCGGCATACGCTGGGTGCTGCTGCTGATTGCCGTCAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAA  >  NC_002947/832236‑832522                                                                                                                                                      |                                                                                                                                          aCCGAATGAGCGACGCCACGCCAACGCCGCCCCCATCAGCCCCGGATCGCGGCATACGCTGGGTGCTGCTGCTGATTGCCGTCAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCtt                                                                                                                                           >  1:336817/1‑150 (MQ=255)   gccctggcgcacctcctggttgttgcctacggccacacgcttgatctgcccagccacttcggcggccaccgggactacgtaAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTAc                                                                                                                                         >  2:108041‑M1/82‑150 (MQ=255)   cGAATGAGCGACGCCACGCCAACGCCGCCCCCATCAGCCCCGGATCGCGGCATACGCTGGGTGCTGCTGCTGATTGCCGTCAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTAc                                                                                                                                         >  2:545884/1‑150 (MQ=255)          gCGACGCCACGCCAACGCCGCCCCCATCAGCCCCGGATCGCGGCATACGCTGGGTGCTGCTGCTGATTGCCGTCAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTcc                                                                                                                                  <  2:357415/150‑1 (MQ=255)          gCGACGCCACGCCAACGCCGCCCCCATCAGCCCCGGATCGCGGCATACGCTGGGTGCTGCTGCTGATTGCCGTCAGCCTGCTCTGGTACTTGCAGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTcc                                                                                                                                  <  2:468160/150‑1 (MQ=255)             acgccacgccAACGCCGCCCCCATCAGCCCCGGATCGCGGCATACGCTGGGTGCTGCTGCTGATTGCCGTCAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCgg                                                                                                                               <  1:50090/150‑1 (MQ=255)                tcctgtttgttgcctacggccacacgcttgatctgcccggccacttcggcggccaccgggactacgtaAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCtt                                                                                                                                           >  1:91968‑M1/69‑135 (MQ=255)                tcctggttgttgcctacggccacacgcttgatctgcccggccacttcggcggccaccgggactacgtaAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCtt                                                                                                                                           <  2:91968‑M1/67‑1 (MQ=255)                  acgccaACGCCGCCCCCATCAGCCCCGGATCGCGGCATACGCTGGGTGCTGCTGCTGATTGCCGTCAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGgcc                                                                                                                          >  2:326871/1‑150 (MQ=255)                    gccaACGCCGCCCCCATCAGCCCCGGATCGCGGCATACGCTGGGTTCTGCTGCTGATTGCCGTCAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGgccgc                                                                                                                        >  2:357050/1‑150 (MQ=255)                      caACGCCGCCCCCATCAGCCCCGGATCGCGGCATACGCTGGGTGCTGCTGCTGATTGCCGTCAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGccgccg                                                                                                                      >  2:341260/1‑150 (MQ=255)                               ccccATCAGCCCCGGATCGCGGCATACGCTGGGTGCTGCTGCTGATTGCCGGCAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCg                                                                                                             >  2:336253/1‑150 (MQ=255)                                cccATCAGCCCCGGATCGCGGCATACGCTGGGTGCTGCTGCTGATTGCCGTCAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCgg                                                                                                            <  1:164564/150‑1 (MQ=255)                                           cGGATCGCGGCATACGCTGGGTGCTGCTGCTGATTGCCGTCAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGc                                                                                                 >  2:772704/1‑150 (MQ=255)                                                      aTACGCTGGGTGCTGCTGCTGATTGCCGTCAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTa                                                                                      >  1:730128/1‑150 (MQ=255)                                                              ggTGCTGCTGCTGATTGCCGTCAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGcaacaa                                                                              >  1:127654/1‑150 (MQ=255)                                                                 gctgctgctGATTGCCGTCAGCCTGCTCTGGTACTTGCTGGCTGTCCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCa                                                                           <  2:186077/150‑1 (MQ=255)                                                                  ctgctgctgATTGCCGTCAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCag                                                                          >  1:610477/1‑150 (MQ=255)                                                                       gctgATTGCCGTCAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGt                                                                     >  2:518622/1‑150 (MQ=255)                                                                        ctgATTGCCGTCAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTg                                                                    <  2:703388/150‑1 (MQ=255)                                                                         tgATTGCCGTCAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTgc                                                                   <  2:834809/150‑1 (MQ=255)                                                                                 gtaagcctgcaggcgagcttgctgggtgtacggcgtatagcggtcagccagcaagtaccagagcaggctTACGTAGTCCCGGTGGCCGCCGAAGTGGCTGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGc                                                           >  2:108041‑M2/70‑150 (MQ=255)                                                                                   aagcctgcaggcgagcttgctgggtgtacggcgtatagcggtcagccagcaagtaccagagcaggctTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCagga                                                                        <  2:91968‑M2/68‑1 (MQ=255)                                                                                   aagcctgcaggcgagcttgctgggtgtacggcgtatagcggtcagccagcaagtaccagagcaggctTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAAACagga                                                                        >  1:91968‑M2/68‑135 (MQ=255)                                                                                     GCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGAtg                                                       >  2:610477‑M1/1‑150 (MQ=255)                                                                                       CTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGcaa                                                                                 >  2:12413‑M1/1‑122 (MQ=255)                                                                                       CTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGcaa                                                                                 <  1:12413‑M1/122‑1 (MQ=255)                                                                                         GCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCt                                                   <  2:532094‑M1/150‑1 (MQ=255)                                                                                            ctGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGGCGAAGTGGCCGGGCATATCAACTGTTTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGtt                                                <  1:532094/150‑1 (MQ=255)                                                                                             tGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTc                                               >  1:665781/1‑150 (MQ=255)                                                                                                tACTTGTTGGCTGACAGCGCTCCGCCGTACCCCCAGCAAGCTCGCCTGCAGGCTGACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGaa                                            <  2:105243/150‑1 (MQ=255)                                                                                                tACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGaa                                            <  2:86210/150‑1 (MQ=255)                                                                                                tACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGaa                                            <  1:357050/150‑1 (MQ=255)                                                                                                           tgACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCag                                                                          >  1:613357/1‑109 (MQ=255)                                                                                                           tgACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCag                                                                          <  2:613357/109‑1 (MQ=255)                                                                                                           tgACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGa                                 <  1:518622/150‑1 (MQ=255)                                                                                                             tacggcgtatagcggtcagccagcaagtaccagagcaggctTACGTAGTCCCGGTGGCCGCCGAAGTGGCTGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGc                               <  1:108041‑M2/109‑1 (MQ=255)                                                                                                             aCCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTc                                               <  2:848741/134‑1 (MQ=255)                                                                                                             aCCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTc                                               >  1:848741/1‑134 (MQ=255)                                                                                                                  tataCGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTAc                          >  1:314819/1‑150 (MQ=255)                                                                                                                       gCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCAt                     >  2:693053/1‑150 (MQ=255)                                                                                                                            aaacCCAGCCGGCTGGCCGGAAGGCTTACGCAGTCCCGGTGGCCGCGGAAGTGGCCGGGCAGATCAAGCGTCTGGCCGTAGGCAACACCCAGTAGGTGCGCCTGGGCGATGTGCTGTTCGAACTCGATCAGGACCAGTACCGCATTGccc                <  2:410256/148‑2 (MQ=255)                                                                                                                                  aGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGccc          >  1:182615/1‑150 (MQ=255)                                                                                                                                       gCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGcc     <  1:772704/150‑1 (MQ=255)                                                                                                                                         tCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGa   >  1:722625/1‑150 (MQ=255)                                                                                                                                          cGCTTGCAGGCTTACGTAGTCCCTGTGGGCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGATCTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGaa  <  2:314819/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                          ACCGAATGAGCGACGCCACGCCAACGCCGCCCCCATCAGCCCCGGATCGCGGCATACGCTGGGTGCTGCTGCTGATTGCCGTCAGCCTGCTCTGGTACTTGCTGGCTGACCGCTATACGCCGTACACCCAGCAAGCTCGCCTGCAGGCTTACGTAGTCCCGGTGGCCGCCGAAGTGGCCGGGCAGATCAAGCGTGTGGCCGTAGGCAACAACCAGGAGGTGCGCCAGGGCGATGTGCTGTTCGAACTCGATCAGGAGCAGTACCGCATTGCCTTGGCCCGTGCCGAA  >  NC_002947/832236‑832522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.