New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1156352	23 (0.730)	16 (0.630)	13/198	NT	44.2%	intergenic (+49/‑167)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase
	?	NC_002947	= 1156375	22 (0.870)					intergenic (+72/‑144)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase

GTATGGGCTGGGGTTGGGCATTGCGCGCAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1156180‑1156352 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcgcgggtgaacccgctcctacGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCCAAAAACTCAATCCATACCCCGCGGCAGATACAGGGTCACCCGCAGCCCGCCCTCCCGCAGGTTCAGCAAGCTCA  <  NC_002947/1156375‑1156236                                                                                                                                                                                                                                                                                                                           GTATGGGCTGGGGTTGGGCATTGCGCGCAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTC                                                                                                                                                                     >  1:24136/1‑150      GGCTGGGGTTGGGCATTGCGCGCAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGC                                                                                                                                                                <  1:775464/150‑1           GGGTTGGGCATTGCGCGCAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTG                                                                                                                                                           >  2:35713/1‑150                                                 GGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGT                                                                                                                     <  1:24635/150‑1                                                          ggGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGG                                                                                                            <  2:606789/148‑1                                                              TTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAG                                                                                                                   >  2:572391/1‑139                                                              TTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAG                                                                                                                   <  1:572391/139‑1                                                                             GAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGG                                                                                                             <  1:95248/130‑1                                                                             GAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGG                                                                                                             >  2:95248/1‑130                                                                                                 CCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGC                                                                                                               <  1:522222/108‑1                                                                                                 CCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGC                                                                                                               >  2:522222/1‑108                                                                                                 CCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGA                                                                                                                 >  1:514238/1‑106                                                                                                 CCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGA                                                                                                                 <  2:514238/106‑1                                                                                                           CCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGG                                                                                                             >  1:218699/1‑100                                                                                                           CCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGG                                                                                                             <  2:218699/100‑1                                                                                                                  GTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGC                                                                                                               <  1:825653/91‑1                                                                                                                  GTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGC                                                                                                               >  2:825653/1‑91                                                                                                                       GATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTC                                                                                                         >  1:53239/1‑92                                                                                                                       GATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTC                                                                                                         <  2:53239/92‑1                                                                                                                                                     TCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCCAAAAACTCAATCCATACCCCGCGGCAGATACAGGGTCACC                                    >  1:166362/1‑131                                                                                                                                                     TCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCCAAAAACTCAATCCATACCCCGCGGCAGATACAGGGTCACC                                    <  2:166362/131‑1                                                                                                                                                       TTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCCAAAAACTCAATCCATACCCCGCGGCAGATACAGGGTCACCCGCAGCCCGCCCTCCCGCAGG               <  1:81746/150‑1                                                                                                                                                       TTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCCAAAAACTCAATCCATACCCCGCGGCAGATACAGGGTCACCCGCAGCCCGCCCTCCCGCAGG               >  1:35713/1‑150                                                                                                                                                              GTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCCAAAAACTCAATCCATACCCCGCGGCAGATACAGGGTCACCCGCAGCGCGCCCTCCCGCAGGTTCAGCA        >  2:440115/1‑150                                                                                                                                                                  ACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCCAAAAACTCAATCCATACCCCGCGGCAGATACAGGGTCACCCGCAGC                              >  2:727609/1‑124                                                                                                                                                                  ACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCCAAAAACTCAATCCATACCCCGCGGCAGATACAGGGTCACCCGCAGC                              <  1:727609/124‑1                                                                                                                                                                   CCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCCAAAAACTCAATCCATACCCCGCGGCAGATACAGGGTCACCCGCAGCCCGCCCTCCCGCAGGTTCAGCAAGCTC   >  1:512075/1‑150                                                                                                                                                                    CCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCCAAAAACTCAATCCATACCCCGCGGCAGATACAGGGTCACCCGCAGCCCGCCCTCCCGCAGGTTCAGCAAGCTCA  >  2:638458/1‑150                                                                                                                                                                                                                                                                                                                           GTATGGGCTGGGGTTGGGCATTGCGCGCAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1156180‑1156352 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcgcgggtgaacccgctcctacGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCCAAAAACTCAATCCATACCCCGCGGCAGATACAGGGTCACCCGCAGCCCGCCCTCCCGCAGGTTCAGCAAGCTCA  <  NC_002947/1156375‑1156236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.