| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1194626 = | 40 (1.260) | 4 (0.130) | 4/240 | NT | 10.6% | coding (759/1653 nt) | uxpA | lipoprotein UxpA |
| ? | NC_002947 | 1194658 = | 29 (0.950) | coding (791/1653 nt) | uxpA | lipoprotein UxpA | |||||
CAAACAGCACCGGCACGCGCCGACCGCTGGCCTGGGTGGCCTCGACCGGTGCGGGCCACAGGTCCTGACCACGGGCGCACAACAGCACGTCGATTTGCGGCACCCGTTCAGCCAGCCACAGGCCGGGGCCCGTGCCTGCATCGGCCATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1194777‑1194626‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGC > NC_002947/1194658‑1194759 CAAACAGCACCGGCACGCGCCGACCGCTGGCCTGGGTGGCCTCGACCGGTGCGGGCCACAGGTCCTGACCACGGGCGCACAACAGCACGTCGATTTGCGGCACCCGTTCAGCCAGCCACAGGCCGGGGCCCGTGCCTGCATCGGCCATGG > 2:96021/1‑150 AAACAGCACCGGCACGCGCCGACCGCTGGCCTGGGTGGCCTCGACCGGTGCGGGCCACAGGTCCTGACCACGGGCGCACAACAGCACGTCGATTTGCGGCACCCGTTCAGCCAGCCACAGGCCGGGGCCCGTGCCTGCATCGGCCATGGC > 1:25898/1‑150 AAACAGCACCGGCACGCGCCGACCGCTGGCCTGGGTGGCCTCGACCGGTGCGGGCCACAGGTCCTGACCACGGGCGCACAACAGCACGTCGATTTGCGGCACCCGTTCAGCCAGCCACAGGCCGGGGCCCGTGCCTGCATCGGCCATGGC > 1:45353/1‑150 AGGCCGGGGCCCGTGCCTGCATCGGCCATGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGC > 1:791670/1‑135 AGGCCGGGGCCCGTGCCTGCATCGGCCATGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGC < 2:791670/135‑1 GGCCGGGGCCCGTGCCTGCATCGGCCATGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACC < 1:282640/118‑1 GGCCGGGGCCCGTGCCTGCATCGGCCATGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACC > 2:282640/1‑118 CAAACAGCACCGGCACGCGCCGACCGCTGGCCTGGGTGGCCTCGACCGGTGCGGGCCACAGGTCCTGACCACGGGCGCACAACAGCACGTCGATTTGCGGCACCCGTTCAGCCAGCCACAGGCCGGGGCCCGTGCCTGCATCGGCCATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1194777‑1194626‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGC > NC_002947/1194658‑1194759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |