New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1194626 =	40 (1.260)	4 (0.130)	4/240	NT	10.6%	coding (759/1653 nt)	uxpA	lipoprotein UxpA
	?	NC_002947	1194658 =	29 (0.950)					coding (791/1653 nt)	uxpA	lipoprotein UxpA

CTGCACGTTTTCGAGCGCGGCGGTGCCCGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGCGCGTGCC  >  NC_002947/1194477‑1194766                                                                                                                                                      |                                                                                                                                              cTGCACGTTTTCGAGCGCGGCGGTGCCCGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCtggtggtg                                                                                                                                               <  1:28366/150‑1 (MQ=255)   gCACGTTTTCGAGCGCGGCGGTGCCCGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGc                                                                                                                                             >  2:25898/1‑150 (MQ=255)      cGTTTTCGAGCGCGGCGGTGCCCGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCAt                                                                                                                                          <  1:473594/150‑1 (MQ=255)        ttttCGAGCGCGGCGGTGCCCGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATgg                                                                                                                                        <  1:290434/150‑1 (MQ=255)         tttCGAGCGCGGCGGTGCCCGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGc                                                                                                                                       <  1:333321/150‑1 (MQ=255)         tttCGAGCGCGGCGGTGCCCGTATTGCAGTGGTTGGCGTGAAACACTCTTTCCCTCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGc                                                                                                                                       <  2:240312/150‑1 (MQ=255)            cGAGCGCGGCGGTGCCCGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGa                                                                                                                                    <  1:432854/150‑1 (MQ=255)             gAGCGCGGCGGTGCCCGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGAt                                                                                                                                   >  1:227197/1‑150 (MQ=255)                         gCCCGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGAt                                                                                                                                   <  2:384076/138‑1 (MQ=255)                         gCCCGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGAt                                                                                                                                   >  1:384076/1‑138 (MQ=255)                           ccGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGc‑cc                                                                                                                    >  2:420727/1‑150 (MQ=255)                           ccGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGCCACAGGc‑cg                                                                                                                    >  2:599636/1‑149 (MQ=255)                            cGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGc‑ccc                                                                                                                   <  1:33329/150‑1 (MQ=255)                              tATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGCCACAGGc‑cgggg                                                                                                                 >  2:218794/1‑146 (MQ=255)                                           ggCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGCCACAGGC‑CGGGGCCCGtgcctgcat                                                                                                    <  1:218794/150‑4 (MQ=255)                                                gccgaccgctggcctgggtggcctcgaccggtgcgggccacaggtcctgaccacgggcgcacaacagcacgtcgatttgcggcacccgttcagccagccacaGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCt                                                                                                              <  2:791670‑M1/33‑1 (MQ=255)                                                gccgaccgctggcctgggtggcctcgaccggtgcgggccacaggtcctgaccacgggcgcacaacagcacgtcgatttgcggcacccgttcagccagccacaGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCt                                                                                                              >  1:791670‑M1/103‑135 (MQ=255)                                                 accgacgCGTACGGCTAGAAGCAGAAAGTCTCACTCAAACAGTGGTACCACTCTCGGCTGCCGGTATTCGAGCAAGCCCGGCTCGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACgg                                                                                              <  2:221280/150‑1 (MQ=255)                                                   cgaccCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGt                                                                                            >  1:96021/1‑150 (MQ=255)                                                     accCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGc                                                                                          <  2:462443/150‑1 (MQ=255)                                                      cccGTACGCCCATGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGcc                                                                                         <  1:441748/150‑1 (MQ=255)                                                              cccAGGATCAGAAAGCCGCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCCTGACCGATAAAGCAATGGGCAGGCCGCC‑GTGGTGGGCTGAACGGTTGCCGCAAATcc                                                                                 >  2:437327/1‑149 (MQ=255)                                                                ggtggcctcgaccggtgcgggccacaggtcctgaccacgggcgcacaacagcacgtcgatttgcggcacccgttcagccagccacaGGCCATGGCCGATGCAGGCACGGGC‑CCCGGcc                                                                                                               <  1:282640‑M1/32‑1 (MQ=255)                                                                ggtggcctcgaccggtgcgggccacaggtcctgaccacgggcgcacaacagcacgtcgatttgcggcacccgttcagccagccacaGGCCATGGCCGATGCAGGCACGGGC‑CCCGGcc                                                                                                               >  2:282640‑M1/87‑118 (MQ=255)                                                                    aTCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTTTCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGc                                                                           <  1:225603/150‑1 (MQ=255)                                                                     tCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCt                                                                          >  2:345791/1‑150 (MQ=255)                                                                            gCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTgc                                                                   <  2:57393/150‑1 (MQ=255)                                                                               tcactcaAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGcc                                                                >  1:430780/1‑150 (MQ=255)                                                                                cactcaAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGccc                                                               >  2:172275/1‑150 (MQ=255)                                                                                   tcaAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGc                                                                                                                                       <  1:621867/76‑1 (MQ=255)                                                                                   tcaAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGc                                                                                                                                       >  2:621867/1‑76 (MQ=255)                                                                                   tcaAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTg                                                            >  2:706358/1‑150 (MQ=255)                                                                                      aaCAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTc                                                         >  2:45353/1‑150 (MQ=255)                                                                                       aCAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCtg                                                                         >  2:249900/1‑133 (MQ=255)                                                                                       aCAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCtg                                                                         <  1:249900/133‑1 (MQ=255)                                                                                             gTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCCCGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGa                                                     <  1:657280/147‑1 (MQ=255)                                                                                             gTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGa                                                     >  2:657280/1‑147 (MQ=255)                                                                                             gTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCt                                                  >  2:660517/1‑150 (MQ=255)                                                                                             gTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCt                                                  <  1:660517/150‑1 (MQ=255)                                                                                                  tgTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGCACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGc                                             <  2:368958/149‑1 (MQ=255)                                                                                                           tgcCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGAc                                                                               <  2:510802/107‑1 (MQ=255)                                                                                                           tgcCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGAc                                                                               >  1:510802/1‑107 (MQ=255)                                                                                                               ggTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGa                                <  1:706358/150‑1 (MQ=255)                                                                                                                gTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAg                               <  1:822618/150‑1 (MQ=255)                                                                                                                                             ccTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGCGCGTGcc  >  2:590924/1‑150 (MQ=255)                                                                                                                                             ccTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGCGCGTGcc  >  1:136747/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                              CTGCACGTTTTCGAGCGCGGCGGTGCCCGTATTGCAGTGGTTGGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGCGCGTGCC  >  NC_002947/1194477‑1194766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.