New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1194626 =	40 (1.260)	4 (0.130)	4/240	NT	10.6%	coding (759/1653 nt)	uxpA	lipoprotein UxpA
	?	NC_002947	1194658 =	29 (0.950)					coding (791/1653 nt)	uxpA	lipoprotein UxpA

GGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGCGCGTGCCGGTGCTGTTTGCCGGCTGCCGGGGCAGCGGTGCC  >  NC_002947/1194519‑1194800                                                                                                                                             |                                                                                                                                               ggCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGCCACAGGC‑CGGGGCCCGtgcctgcat                                                                                                                                      <  1:218794/150‑4 (MQ=255)      gccgaccgctggcctgggtggcctcgaccggtgcgggccacaggtcctgaccacgggcgcacaacagcacgtcgatttgcggcacccgttcagccagccacaGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCt                                                                                                                                                <  2:791670‑M1/33‑1 (MQ=255)      gccgaccgctggcctgggtggcctcgaccggtgcgggccacaggtcctgaccacgggcgcacaacagcacgtcgatttgcggcacccgttcagccagccacaGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCt                                                                                                                                                >  1:791670‑M1/103‑135 (MQ=255)       accgacgCGTACGGCTAGAAGCAGAAAGTCTCACTCAAACAGTGGTACCACTCTCGGCTGCCGGTATTCGAGCAAGCCCGGCTCGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACgg                                                                                                                                <  2:221280/150‑1 (MQ=255)         cgaccCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGt                                                                                                                              >  1:96021/1‑150 (MQ=255)           accCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGc                                                                                                                            <  2:462443/150‑1 (MQ=255)            cccGTACGCCCATGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGcc                                                                                                                           <  1:441748/150‑1 (MQ=255)                    cccAGGATCAGAAAGCCGCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCCTGACCGATAAAGCAATGGGCAGGCCGCC‑GTGGTGGGCTGAACGGTTGCCGCAAATcc                                                                                                                   >  2:437327/1‑149 (MQ=255)                          aTCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTTTCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGc                                                                                                             <  1:225603/150‑1 (MQ=255)                           tCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCt                                                                                                            >  2:345791/1‑150 (MQ=255)                                  gCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTgc                                                                                                     <  2:57393/150‑1 (MQ=255)                                     tcactcaAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGcc                                                                                                  >  1:430780/1‑150 (MQ=255)                                      cactcaAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGccc                                                                                                 >  2:172275/1‑150 (MQ=255)                                         tcaAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTg                                                                                              >  2:706358/1‑150 (MQ=255)                                            aaCAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTc                                                                                           >  2:45353/1‑150 (MQ=255)                                             aCAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCtg                                                                                                           >  2:249900/1‑133 (MQ=255)                                             aCAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCtg                                                                                                           <  1:249900/133‑1 (MQ=255)                                                   gTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCCCGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGa                                                                                       <  1:657280/147‑1 (MQ=255)                                                   gTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGa                                                                                       >  2:657280/1‑147 (MQ=255)                                                   gTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCt                                                                                    >  2:660517/1‑150 (MQ=255)                                                   gTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCt                                                                                    <  1:660517/150‑1 (MQ=255)                                                        tgTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGCACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGc                                                                               <  2:368958/149‑1 (MQ=255)                                                                 tgcCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGAc                                                                                                                 <  2:510802/107‑1 (MQ=255)                                                                 tgcCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGAc                                                                                                                 >  1:510802/1‑107 (MQ=255)                                                                     ggTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGa                                                                  <  1:706358/150‑1 (MQ=255)                                                                      gTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAg                                                                 <  1:822618/150‑1 (MQ=255)                                                                                                   ccTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGCGCGTGcc                                    >  2:590924/1‑150 (MQ=255)                                                                                                   ccTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGCGCGTGcc                                    >  1:136747/1‑150 (MQ=255)                                                                                                            aggccggggcccgtgcctgcatcggccatggccTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGgc                                           >  1:791670‑M2/34‑135 (MQ=255)                                                                                                            aggccggggcccgtgcctgcatcggccatggccTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGgc                                           <  2:791670‑M2/102‑1 (MQ=255)                                                                                                             ggccggggcccgtgcctgcatcggccatggccTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCAcc                                                           >  2:282640‑M2/33‑118 (MQ=255)                                                                                                             ggccggggcccgtgcctgcatcggccatggccTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCAcc                                                           <  1:282640‑M2/86‑1 (MQ=255)                                                                                                             GCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGCGCGTGCCGGTGCTGttt                          >  1:25898‑M1/1‑150 (MQ=255)                                                                                                             GCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGCGCGTGCCGGTGCTGttt                          >  1:45353‑M1/1‑150 (MQ=255)                                                                                                              CCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGCGCGTGCCGGTGCTGTTTg                         >  2:96021‑M1/1‑150 (MQ=255)                                                                                                                     cGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGCGCGTGCCGGTGCTGTTTGCCGGCTg                  >  1:57963/1‑150 (MQ=255)                                                                                                                        tGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGCGCGTGCCGGTGCTGTTTGCCGGCTGCCg               <  1:345791/150‑1 (MQ=255)                                                                                                                           aGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGCGCGTGCCGGTGCTGTTTGCCGGCTGCCgggg            <  1:590924/150‑1 (MQ=255)                                                                                                                                    c‑cccGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGCGCGTGCCGGTGCTGTTTGCCGGCTGCCGGGGCAGCGGTGc   >  2:808493/1‑150 (MQ=255)                                                                                                                                      cccGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGCGCGTGCCGGTGCTGTTTGCCGGCTGCCGGGGCAGCGGTGcc  >  1:542564/1‑150 (MQ=255)                                                                                                                                             |                                                                                                                                               GGCGTGACCGACCCGTACGCCCAGGATCAGAAAGCCTCACTCAAACAGTGGTACCAGTCTCTGCTGCCGGTATTCGAGCAAGCCCGGCACGAGGCTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGC‑CCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTCAGGACCTGTGGCCCGCACCGGTCGAGGCCACCCAGGCCAGCGGTCGGCGCGTGCCGGTGCTGTTTGCCGGCTGCCGGGGCAGCGGTGCC  >  NC_002947/1194519‑1194800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.