New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1208314 =	38 (1.200)	3 (0.100)	3/236	NT	8.3%	coding (693/3150 nt)	PP_1058	hypothetical protein
	?	NC_002947	1208344 =	30 (1.000)					coding (663/3150 nt)	PP_1058	hypothetical protein

CTGTTCATCGAAAACCGCGACCTGCTGGATACCCAGGACCCACGTAACAACCCGGCAGTGGACTGGCCACGCTTTGCCAAGGCCGCCTACAGCCAGGTCGCCAAGTACCTGGCCCTGCCCGGCCAGTCTGCCGGCGGCAGCACCCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1208463‑1208314 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCCAGCAGGTCGCGGTTTTCGA  >  NC_002947/1208344‑1208456                                                                                                                                                                                                                                                                         CTGTTCATCGAAAACCGCGACCTGCTGGATACCCAGGACCCACGTAACAACCCGGCAGTGGACTGGCCACGCTTTGCCAAGGCCGCCTACAGCCAGGTCGCCAAGTACCTGGCCCTGCCCGGCCAGTCTGCCGGCGGCAGCACCCTGGCC                                                                                                                   >  1:108813/1‑150                                                                                                                  CCTGCCCGGCCAGTCTGCCGGCGGCAGCACCCTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCCAGCAGGTCGCGGTTTTCGA  >  1:67209/1‑150                                                                                                                        CGGCCAGTCTGCCGGCGGCAGCACCCTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGG                                              <  1:820666/100‑1                                                                                                                        CGGCCAGTCTGCCGGCGGCAGCACCCTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGG                                              >  2:820666/1‑100                                                                                                                                                                                                                                                                         CTGTTCATCGAAAACCGCGACCTGCTGGATACCCAGGACCCACGTAACAACCCGGCAGTGGACTGGCCACGCTTTGCCAAGGCCGCCTACAGCCAGGTCGCCAAGTACCTGGCCCTGCCCGGCCAGTCTGCCGGCGGCAGCACCCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1208463‑1208314 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCCAGCAGGTCGCGGTTTTCGA  >  NC_002947/1208344‑1208456

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.