New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1208314 =	38 (1.200)	3 (0.100)	3/236	NT	8.3%	coding (693/3150 nt)	PP_1058	hypothetical protein
	?	NC_002947	1208344 =	30 (1.000)					coding (663/3150 nt)	PP_1058	hypothetical protein

TCGGTGGTGTCGGGGCCGCCCTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCCAGCAGGTCGCGGTTTTCGATGAACAGCAAGCTGTTGACCATCACGG  >  NC_002947/1208195‑1208483                                                                                                                                                      |                                                                                                                                            tCGGTGGTGTCGGGGCCGCCCTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCg                                                                                                                                             <  2:677025/150‑1 (MQ=255)       tcgaaaaccgcgacctgctggatacccaggacccacgtaacaacccggcagtggactggccacgctttgccaaggccgcctacagccaggtcgccaagtacctggccctgcccGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAgg                                                                                                                                       >  1:67209‑M1/114‑150 (MQ=255)                  gccCTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACtt                                                                                                                            >  2:284583/1‑150 (MQ=255)                  gccCTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACtt                                                                                                                            >  1:493802/1‑150 (MQ=255)                   cccTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTg                                                                                                                           <  2:173556/150‑1 (MQ=255)                        gTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGAc                                                                                                                      <  2:32717/150‑1 (MQ=255)                                 cacgcTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGccctg                                                                                                             <  1:284583/150‑5 (MQ=255)                                               tcatcTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCa                                                                                                                                         <  2:702822/108‑1 (MQ=255)                                               tcatcTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCa                                                                                                                                         >  1:702822/1‑108 (MQ=255)                                                catcTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCaaa                                                                                              <  1:646222/150‑1 (MQ=255)                                                  tcTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGc                                                                                            <  1:520984/150‑1 (MQ=255)                                                   ccggcagtggactggccacgctttgccaaggccgcctacagccaggtcgccaagtacctggccctgcccGGCCAGGGTGCTGCCGCCGGCAGACTGGCCg                                                                                                                                             >  2:820666‑M1/70‑100 (MQ=255)                                                   ccggcagtggactggccacgctttgccaaggccgcctacagccaggtcgccaagtacctggccctgcccGGCCAGGGTGCTGCCGCCGGCAGACTGGCCg                                                                                                                                             <  1:820666‑M1/31‑1 (MQ=255)                                                   cTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCg                                                                                           >  1:319247/1‑150 (MQ=255)                                                      ccGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTgg                                                                                        <  1:135204/150‑1 (MQ=255)                                                                     gcCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCgg                                                                         <  2:445955/150‑1 (MQ=255)                                                                     gcCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGAACTGGTTTTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCgg                                                                         <  2:29944/150‑1 (MQ=255)                                                                         gACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTgg                                                                                                  >  1:317475/1‑121 (MQ=255)                                                                         gACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTgg                                                                                                  <  2:317475/121‑1 (MQ=255)                                                                         gACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCATGACAAGTACACTGcctttttt                                                                     >  2:108813/1‑144 (MQ=255)                                                                          acacCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGgtt                                                                      >  2:45297/1‑148 (MQ=255)                                                                          acacCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGgtt                                                                      <  1:45297/148‑1 (MQ=255)                                                                           cacCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGgttgtt                                                                   <  2:319247/150‑1 (MQ=255)                                                                              cGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACg                                                                >  2:711689/1‑150 (MQ=255)                                                                                        tCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTgg                                                      <  1:711689/150‑1 (MQ=255)                                                                                               aGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCca                                               >  1:39502/1‑150 (MQ=255)                                                                                                               cAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTg                                                              >  1:538423/1‑119 (MQ=255)                                                                                                               cAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTg                                                              <  2:538423/119‑1 (MQ=255)                                                                                                               cAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTgg                                                      >  2:171825/1‑127 (MQ=255)                                                                                                               cAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTgg                                                      <  1:171825/127‑1 (MQ=255)                                                                                                               cAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCCAGCAGGTCGCGGTTTTc                               <  1:486761/150‑1 (MQ=255)                                                                                                               cAGCTGTGTGGCCAGGGTGCTGCCACCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCCAGCAGGTCGCGGTTTTc                               <  1:640366/150‑1 (MQ=255)                                                                                                                 cctgcccggccagtctgccggcggcagcaccctggccGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCCAGCAGGTCGCGGTTTTCGa                             >  1:67209‑M2/38‑150 (MQ=255)                                                                                                                  cTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCCAGCAGGTCGCGGTTTTCGAt                            <  1:636543/150‑1 (MQ=255)                                                                                                                       cggccagtctgccggcggcagcaccctggccGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCgg                                                                         <  1:820666‑M2/69‑1 (MQ=255)                                                                                                                       cggccagtctgccggcggcagcaccctggccGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCgg                                                                         >  2:820666‑M2/32‑100 (MQ=255)                                                                                                                        GGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCCAGCAGGTCGCGGTTTTCGATGAACAg                      >  1:108813‑M1/1‑150 (MQ=255)                                                                                                                                 gctgcCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCCAGCAGGTCGCGGTTTTCGATGAACAGCAAGCTGtt             <  2:493802/150‑1 (MQ=255)                                                                                                                                    gccgccGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGt                                                               >  1:789943/1‑97 (MQ=255)                                                                                                                                    gccgccGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGt                                                               <  2:789943/97‑1 (MQ=255)                                                                                                                                                      gggCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCCAGCAGGTCGCGGTTTTCGATGAACAGCAAGCTGTTGACCATCACgg  >  2:272600/1‑140 (MQ=255)                                                                                                                                                      gggCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCCAGCAGGTCGCGGTTTTCGATGAACAGCAAGCTGTTGACCATCACgg  <  1:272600/140‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                            TCGGTGGTGTCGGGGCCGCCCTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCCAGCAGGTCGCGGTTTTCGATGAACAGCAAGCTGTTGACCATCACGG  >  NC_002947/1208195‑1208483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.