New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1208314 =	38 (1.200)	3 (0.100)	3/236	NT	8.3%	coding (693/3150 nt)	PP_1058	hypothetical protein
	?	NC_002947	1208344 =	30 (1.000)					coding (663/3150 nt)	PP_1058	hypothetical protein

GTAGTCGCGCACGATGCGCTGGCGTGCCTCGGTGGTGTCGGGGCCGCCCTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCCAGCAGGTCGCGGTTTTCGATGAACAG  >  NC_002947/1208167‑1208463                                                                                                                                                    |                                                                                                                                                      gTAGTCGCGCACGATGCGCTGGCGTGCCTCGGTGGTGTCGGGGCCGCCCTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGc                                                                                                                                                     >  1:290210/1‑150 (MQ=255) gTAGTCGCGCACGATGCGCTGGCGTGCCTCGGTGGTGTCGGGGCCGCCCTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGc                                                                                                                                                     >  1:445955/1‑150 (MQ=255)                gcgcTGGCGTGCCTCGGTGGTGTCGGGGCCGCCCTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTgccgcc                                                                                                                                      <  1:829658/150‑1 (MQ=255)                    tGGCGTGCCTCGGTGGTGTCGGGGCCGCCCTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCa                                                                                                                                  >  1:32717/1‑150 (MQ=255)                        ctGCCTCGGTGGTGTCGGGGCCGCCCTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACt                                                                                                                              >  1:29944/2‑150 (MQ=255)                           ccTCGGTGGTGTCGGGGCCGCCCTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGc                                                                                                                           <  2:71839/150‑1 (MQ=255)                             tCGGTGGTGTCGGGGCCGCCCTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCg                                                                                                                         <  2:677025/150‑1 (MQ=255)                                   tcgaaaaccgcgacctgctggatacccaggacccacgtaacaacccggcagtggactggccacgctttgccaaggccgcctacagccaggtcgccaagtacctggccctgcccGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAgg                                                                                                                   >  1:67209‑M1/114‑150 (MQ=255)                                              gccCTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACtt                                                                                                        >  2:284583/1‑150 (MQ=255)                                              gccCTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACtt                                                                                                        >  1:493802/1‑150 (MQ=255)                                               cccTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTg                                                                                                       <  2:173556/150‑1 (MQ=255)                                                ccTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGc                                                                                                                           >  1:505748/1‑129 (MQ=255)                                                ccTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGc                                                                                                                           <  2:505748/129‑1 (MQ=255)                                                  tGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGt                                                                                                                                               >  1:766487/1‑107 (MQ=255)                                                  tGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGt                                                                                                                                               <  2:766487/107‑1 (MQ=255)                                                    gTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGAc                                                                                                  <  2:32717/150‑1 (MQ=255)                                                             cacgcTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGccctg                                                                                         <  1:284583/150‑5 (MQ=255)                                                                           tcatcTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCa                                                                                                                     <  2:702822/108‑1 (MQ=255)                                                                           tcatcTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCa                                                                                                                     >  1:702822/1‑108 (MQ=255)                                                                            catcTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCaaa                                                                          <  1:646222/150‑1 (MQ=255)                                                                              tcTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGc                                                                        <  1:520984/150‑1 (MQ=255)                                                                               ccggcagtggactggccacgctttgccaaggccgcctacagccaggtcgccaagtacctggccctgcccGGCCAGGGTGCTGCCGCCGGCAGACTGGCCg                                                                                                                         <  1:820666‑M1/31‑1 (MQ=255)                                                                               ccggcagtggactggccacgctttgccaaggccgcctacagccaggtcgccaagtacctggccctgcccGGCCAGGGTGCTGCCGCCGGCAGACTGGCCg                                                                                                                         >  2:820666‑M1/70‑100 (MQ=255)                                                                               cTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCg                                                                       >  1:319247/1‑150 (MQ=255)                                                                                  ccGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTgg                                                                    <  1:135204/150‑1 (MQ=255)                                                                                                 gcCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCgg                                                     <  2:445955/150‑1 (MQ=255)                                                                                                 gcCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGAACTGGTTTTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCgg                                                     <  2:29944/150‑1 (MQ=255)                                                                                                     gACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTgg                                                                              >  1:317475/1‑121 (MQ=255)                                                                                                     gACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTgg                                                                              <  2:317475/121‑1 (MQ=255)                                                                                                     gACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCATGACAAGTACACTGcctttttt                                                 >  2:108813/1‑144 (MQ=255)                                                                                                      acacCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGgtt                                                  >  2:45297/1‑148 (MQ=255)                                                                                                      acacCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGgtt                                                  <  1:45297/148‑1 (MQ=255)                                                                                                       cacCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGgttgtt                                               <  2:319247/150‑1 (MQ=255)                                                                                                          cGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACg                                            >  2:711689/1‑150 (MQ=255)                                                                                                                    tCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTgg                                  <  1:711689/150‑1 (MQ=255)                                                                                                                           aGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCca                           >  1:39502/1‑150 (MQ=255)                                                                                                                                           cAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTg                                          >  1:538423/1‑119 (MQ=255)                                                                                                                                           cAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTg                                          <  2:538423/119‑1 (MQ=255)                                                                                                                                           cAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTgg                                  >  2:171825/1‑127 (MQ=255)                                                                                                                                           cAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTgg                                  <  1:171825/127‑1 (MQ=255)                                                                                                                                           cAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCCAGCAGGTCGCGGTTTTc           <  1:486761/150‑1 (MQ=255)                                                                                                                                           cAGCTGTGTGGCCAGGGTGCTGCCACCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCCAGCAGGTCGCGGTTTTc           <  1:640366/150‑1 (MQ=255)                                                                                                                                              cTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCCAGCAGGTCGCGGTTTTCGAt        <  1:636543/150‑1 (MQ=255)                                                                                                                                                    GGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCCAGCAGGTCGCGGTTTTCGATGAACAg  >  1:108813‑M1/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                      GTAGTCGCGCACGATGCGCTGGCGTGCCTCGGTGGTGTCGGGGCCGCCCTGGTAGGCACGCACGCTGGCAGAAATCATCTGCCGGATCTTCTCCGCGCCCGACACCGTCAGGCCGTCGGGTGAGTGGCGATATTTCTCCAGCTGTGTGGCCAGGGTGCTGCCGCCGGCAGACTGGCCGGGCAGGGCCAGGTACTTGGCGACCTGGCTGTAGGCGGCCTTGGCAAAGCGTGGCCAGTCCACTGCCGGGTTGTTACGTGGGTCCTGGGTATCCAGCAGGTCGCGGTTTTCGATGAACAG  >  NC_002947/1208167‑1208463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.