New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1432044	29 (0.920)	4 (0.140)	4/232	NT	12.1%	coding (117/1092 nt)	xenA	protein XenA
	?	NC_002947	= 1432069	31 (1.050)					coding (142/1092 nt)	xenA	protein XenA

AACAACAGTATTCAAATGAACCCGGAGTTTCCCATGTCCGCACTGTTCGAACCCTACACCCTCAAAGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1431895‑1432044 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaccacCACGGGCCAGGCCGGCCAGGTGAACGTGGTGCCAGTCGTTGATCATGCCGTCTTCGGCCATGTACTGG  <  NC_002947/1432069‑1432002                                                                                                                                                                                                                            AACAACAGTATTCAAATGAACCCGGAGTTTCCCATGTCCGCACTGTTCGAACCCTACACCCTCAAAGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCAC                                                                      <  1:764136/150‑1                                                                                         TCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACCACGGGCCAGGCCGGCCAGGTGAACGTGGT                                        <  1:645610/92‑1                                                                                         TCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACCACGGGCCAGGCCGGCCAGGTGAACGTGGT                                        >  2:645610/1‑92                                                                                                                     GGCCGAAGACGGCATGATCAACGACTGGCACCACCACGGGCCAGGCCGGCCAGGTGAACGTGGTGCCAGTCGTTGATCATGCCGTCTTCGGCCATGTACTGG  >  1:559311/1‑102                                                                                                                     GGCCGAAGACGGCATGATCAACGACTGGCACCACCACGGGCCAGGCCGGCCAGGTGAACGTGGTGCCAGTCGTTGATCATGCCGTCTTCGGCCATGTACTGG  <  2:559311/102‑1                                                                                                                                                                                                                            AACAACAGTATTCAAATGAACCCGGAGTTTCCCATGTCCGCACTGTTCGAACCCTACACCCTCAAAGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1431895‑1432044 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaccacCACGGGCCAGGCCGGCCAGGTGAACGTGGTGCCAGTCGTTGATCATGCCGTCTTCGGCCATGTACTGG  <  NC_002947/1432069‑1432002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.