New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1432044	29 (0.920)	4 (0.140)	4/232	NT	12.1%	coding (117/1092 nt)	xenA	protein XenA
	?	NC_002947	= 1432069	31 (1.050)					coding (142/1092 nt)	xenA	protein XenA

AACAACAGTATTCAAATGAACCCGGAGTTTCCCATGTCCGCACTGTTCGAACCCTACACCCTCAAAGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCACTGCTGTGGCGCCGG‑AAGGGCGTATCACCCCCGGTTGCGCCGGTATCTGGAGCGATGCCCACGCTCAGGCGTTCGTACCGGTGGTGCAGGC  >  NC_002947/1431895‑1432190                                                                                                                                                      |                                                                                                                                                    aacaacAGTATTCAAATGAACCCGGAGTTTCCCATGTCCGCACTGTTCGAACCCTACACCCTCAAAGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCAC                                                                                                                                                     <  1:764136‑M1/150‑1 (MQ=255)     acaGTATTCAAATGAACCCGGAGTTTCCCGTGTCCGCACTGTTCGAACCCTACACCCTCAAAGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACGACGTTc                                                                                                                                                 >  2:39224/1‑150 (MQ=255)       aGTATTCAAATGAACCCGGAGTTTCCCATGTCCGCACTGTTCGAACCCTACACCCTCAAAGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCAc                                                                                                                                               >  2:247941/1‑150 (MQ=255)                  gAACCCGCAGTTTCCCACCTCCGCACTGTTCGAACCCTACACCCTCAAAGACGTCACCCTGCGTAACCCTATCGCCACTCCGCCGACGTGCCACTACATTGCNGAACACGGCATGATCAACTACTGGCACCACTTTCACCTGGCCGGCCt                                                                                                                                    <  1:345953/150‑1 (MQ=255)                                        gCACTGTTCGAACCCTACACCCTCAAAGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTg                                                                                                              <  1:302592/150‑1 (MQ=255)                                        gCACTGTTCGAACCCTACACCCTCAAAGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTg                                                                                                              >  1:467083/1‑150 (MQ=255)                                          aCTGTTCGAACCCTACACCCTCAAAGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCt                                                                                                            >  2:468523/1‑150 (MQ=255)                                            tttacGAACCCTACACCCTCAAAGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCtgg                                                                                                          >  1:166452/5‑150 (MQ=255)                                                   aCCCTACACCCTCAAAGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGa                                                                                                   <  1:315434/150‑1 (MQ=255)                                                     ccTACACCCTCAAAGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGGTTGCTGGTGGTCGAgg                                                                                                 <  1:839858/150‑1 (MQ=255)                                                             cTCAAAGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCActgct                                                                                         >  2:462357/1‑150 (MQ=255)                                                             cTCAAAGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCActgct                                                                                         <  2:166452/150‑1 (MQ=255)                                                                 aaGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCACTGCTGTgg                                                                                     <  1:247941/150‑1 (MQ=255)                                                                           ccTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCgtg                                                                                                                            <  2:736480/101‑1 (MQ=255)                                                                           ccTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCgtg                                                                                                                            >  1:736480/1‑101 (MQ=255)                                                                           ccTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCgg                                                                                                                  <  1:370941/111‑1 (MQ=255)                                                                           ccTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCgg                                                                                                                  >  2:370941/1‑111 (MQ=255)                                                                             tGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCACTGCTGTGGCGCCGG‑AAGGGc                                                                        <  2:467083/150‑1 (MQ=255)                                                                                      gTATCGCCATTCCGCCGATGTGCCAGAACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGGGGTGCCGGCTTGCTGGTGGTCGAGGCCACTGCTGGGGAGCAGG‑AAAGGCGTATCAccc                                                               >  2:599599/1‑150 (MQ=255)                                                                                         tCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACcacgggccaggccggccaggtgaacgtggt                                                                                                                       >  2:645610‑M1/1‑62 (MQ=255)                                                                                         tCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACcacgggccaggccggccaggtgaacgtggt                                                                                                                       <  1:645610‑M1/92‑31 (MQ=255)                                                                                         tCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCACTGCTGTGGCGCCGG‑aa                                                                            >  1:260353/1‑134 (MQ=255)                                                                                         tCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCACTGCTGTGGCGCCGG‑aa                                                                            <  2:260353/134‑1 (MQ=255)                                                                                          cGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGAAGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCACTGCTGTGGCGCCGG‑AAGGGCGTATCACCCCCgg                                                           >  2:210959/1‑150 (MQ=255)                                                                                                            ccAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGgtggtgccagtcgttgatcatgccgtcttcggcc                                                                                          >  1:559311‑M2/1‑68 (MQ=255)                                                                                                            ccAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGgtggtgccagtcgttgatcatgccgtcttcggcc                                                                                          <  2:559311‑M2/102‑35 (MQ=255)                                                                                                                tACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCACTGCTGTGGCGCCGG‑AAGGGCGTATCACCCCCGGTTGCGCCGGTATCTGGAGCGAt                                     <  2:385834/150‑1 (MQ=255)                                                                                                                     ggCCGAAGACGGCATGATCAACGACTGGCACCACcacgggccaggccggccaggtgaacgtggtgccagtcgttgatcatgccgtcttcggccatgtactgg                                                                                 >  1:559311‑M1/1‑34 (MQ=255)                                                                                                                     ggCCGAAGACGGCATGATCAACGACTGGCACCACcacgggccaggccggccaggtgaacgtggtgccagtcgttgatcatgccgtcttcggccatgtactgg                                                                                 <  2:559311‑M1/102‑69 (MQ=255)                                                                                                                        cGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCACTGCTGTGGCGCCGG‑AAGGGCGTATCACCCCCGGTTGCGCCGGTATCTGGAGCGATGCCCACGc                             >  1:817501/1‑150 (MQ=255)                                                                                                                           aGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCACTGCTGTGGCGCCGG‑AAGGGCGTATCACCCCCGGTTGCGCCGGTATCTGGAGCGATGCCCACGCTCa                          <  2:726233/150‑1 (MQ=255)                                                                                                                           aGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCACTGCTGTGGCGCCGG‑AAGGGCGTATCACCCCCGGTTGCGCCGGTATCTGGAGCGATGCCCACGCTCa                          >  2:74869/1‑150 (MQ=255)                                                                                                                               ggCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCACTGCTGTGGCGCCGG‑AAGGGCGTATCACCCCCGGTTGCGCCGGTATCTGGAGCGATGCCCACGCTCAGGCg                      >  2:75705/1‑150 (MQ=255)                                                                                                                                 cATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCACTGCTGTGGCGCCGG‑AAGGGCGTATCACCCCCGGTTGCGCCGGTATCTGGAGCGATGCCCACGCTCAGGCGtt                    <  1:75705/150‑1 (MQ=255)                                                                                                                                     aTCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCACTGCTGTGGCGCCGG‑AAGGGCGTATCACCCCCGGTTGCGCCGGTATCTGGAGCGATGCCCACGCTCAGGCGTTCGTa                >  2:47111/1‑150 (MQ=255)                                                                                                                                            aCTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCACTGCTGTGGCGCCGG‑AAGGGCGTATCACCCCCGGTTGCGCCGGTATCTGGAGCGATGCCCACGCTCAGGCGTTCGTACCggtgg         <  1:187985/150‑1 (MQ=255)                                                                                                                                             cTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCACTGCTGTGGCGCCGG‑AAGGGCGTATCACCCCCGGTTGCGCCGGTATCTGGAGCGATGCCCACGCTCAGGCGTTCGTACCggtggt        <  1:462357/150‑1 (MQ=255)                                                                                                                                                  accacGTTCACCTGGCCGGCCTGGCCCGTGgtggtgccagtcgttgatcatgccgtcttcggccatgtactggcacatcggcggaatggcga                                                              >  2:645610‑M2/1‑30 (MQ=255)                                                                                                                                                  accacGTTCACCTGGCCGGCCTGGCCCGTGgtggtgccagtcgttgatcatgccgtcttcggccatgtactggcacatcggcggaatggcga                                                              <  1:645610‑M2/92‑63 (MQ=255)                                                                                                                                                  accacGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCGCTGCTGTGGGGCCGGCGAGGAGGCAACCCACGCGG‑AAAGGGGGTAGCTGGAGCGATGCCCACGCTCAGGCCTTCGTACCCGCGGTGGAgg   >  1:831483/1‑150 (MQ=255)                                                                                                                                                   ccacGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCACTGCTGTGGCGCCGG‑AAGGGCGTATCACCCCCGGTTGCGCCGGTATCTGGAGCGATGCCCACGCTCAGGCGTTAGTACCGGTGGTGCAGGc  >  2:720412/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                    AACAACAGTATTCAAATGAACCCGGAGTTTCCCATGTCCGCACTGTTCGAACCCTACACCCTCAAAGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACGTTCACCTGGCCGGCCTGGCCCGTGGTGGTGCCGGCTTGCTGGTGGTCGAGGCCACTGCTGTGGCGCCGG‑AAGGGCGTATCACCCCCGGTTGCGCCGGTATCTGGAGCGATGCCCACGCTCAGGCGTTCGTACCGGTGGTGCAGGC  >  NC_002947/1431895‑1432190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.