New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 194955828 (0.880)4 (0.130) 4/238 NT 12.1% coding (140/1746 nt) PP_1749 acetyltransferase
?NC_002947 = 1949600 31 (1.020)coding (98/1746 nt) PP_1749 acetyltransferase

GACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1949408‑1949558
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccAGCCACACGACCAGCCGCGTGCCGTGCACTGCGGCTGGGGCCGGCTGTTGATAGGCCACACCTACCCCGACCCGGCTTCCCTGGCCGAGGATCTGCTCGACGAGCACCCGGGCGAACGCGACATCGCCCTGTACGTGGCCGCACCGC  <  NC_002947/1949600‑1949454
                                                                                                                                                                                                                                                                                                          
GACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGC                                                                                                                                                      >  1:340857/1‑150
                                                  TGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCAGCCACACGACCAGCCGCGTGCCGTGCACTGCGGCTGGGGCCGGCTGTT                                                                                                    <  2:340857/150‑1
                                                       CCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCAGCCACACGACCAGCCGCGTGCCGTGCACTGCGGCTGGGGCCGGTTGTTGATAG                                                                                               <  1:614305/150‑1
                                                                                               GAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCAGCCACACGACCAGCCGCGTGCCGTGCACTGCGGCTGGGGCCGGCTGTTGA                                                                                                  <  1:828001/107‑1
                                                                                               GAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCAGCCACACGACCAGCCGCGTGCCGTGCACTGCGGCTGGGGCCGGCTGTTGA                                                                                                  >  2:828001/1‑107
                                                                                                                                                    GCCAGCCACACGACCAGCCGCGTGCCGTGCACTGCGGCTGGGGCCGGCTGTTGATAGGCCACACCTACCCCGACCCGGCTTCCCTGGCCGAGGATCTGCTCGACGAGCACCCGGGCGAACGCGACATCGCCCTGTACGTGGCCGCACCGC  >  2:652744/1‑150
                                                                                                                                                     CCAGCCACACGACCAGCCGCGTGCCGTGCACTGCGGCTGGGGCCGGCTGTTGATAGGC                                                                                             >  1:344857/1‑58
                                                                                                                                                     CCAGCCACACGACCAGCCGCGTGCCGTGCACTGCGGCTGGGGCCGGCTGTTGATAGGC                                                                                             <  2:344857/58‑1
                                                                                                                                                                                                                                                                                                          
GACGGGTCGAGGAACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1949408‑1949558
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccAGCCACACGACCAGCCGCGTGCCGTGCACTGCGGCTGGGGCCGGCTGTTGATAGGCCACACCTACCCCGACCCGGCTTCCCTGGCCGAGGATCTGCTCGACGAGCACCCGGGCGAACGCGACATCGCCCTGTACGTGGCCGCACCGC  <  NC_002947/1949600‑1949454

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.