New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 194955828 (0.880)4 (0.130) 4/238 NT 12.1% coding (140/1746 nt) PP_1749 acetyltransferase
?NC_002947 = 1949600 31 (1.020)coding (98/1746 nt) PP_1749 acetyltransferase

ACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGA  >  NC_002947/1949421‑1949705
                                                                                                                                         |                                                                                                                                                   
aCAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGc                                                                                                                                         <  1:388885/150‑1 (MQ=255)
        tgAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTgcacg                                                                                                                                 <  1:687306/150‑1 (MQ=255)
               ccTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCAcgcg                                                                                                                          >  1:215908/1‑150 (MQ=255)
                      cAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTc                                                                                                                   >  2:546642/1‑150 (MQ=255)
                            ctgctgCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGtgg                                                                                                             >  2:593841/1‑150 (MQ=255)
                                 gcggtgcggCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTggc                                                                                                        >  2:652744‑M2/1‑147 (MQ=255)
                                    gtgcggCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGc                                                                                                     >  2:632873/1‑150 (MQ=255)
                                     tgcggCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCagccacacgaccagccgcgtgccgtgcactgcggctggggccggctgtt                                                                                                    <  2:340857‑M1/150‑50 (MQ=255)
                                         gCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCg                                                                                                >  1:342131/1‑150 (MQ=255)
                                          ccACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCagccacacgaccagccgcgtgccgtgcactgcggctggggccggttgttgatag                                                                                               <  1:614305‑M1/150‑55 (MQ=255)
                                           cACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGcc                                                                                              >  2:289424/1‑150 (MQ=255)
                                                aCAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCa                                                                                         >  2:198073/1‑150 (MQ=255)
                                                             gcgTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAg                                                                            >  1:425612/1‑150 (MQ=255)
                                                             gcgTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAg                                                                            <  1:198073/150‑1 (MQ=255)
                                                                    cccGGGTGGTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCg                                                                     <  1:511632/150‑1 (MQ=255)
                                                                     ccGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGt                                                                    >  1:785803/1‑150 (MQ=255)
                                                                      cGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTa                                                                   <  2:215908/150‑1 (MQ=255)
                                                                          tGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGAc                                                               <  1:243846/150‑1 (MQ=255)
                                                                             tcgtcgAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGGTGCTGTCGCCGGCCAGGGGCGGCTGCAGGCGGACGAAGGGCggg                                                            >  2:326619/1‑149 (MQ=255)
                                                                                tcgAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGcc                                                         >  2:793350/1‑150 (MQ=255)
                                                                                  gAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCATCAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTTCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTg                                                       >  2:756624/1‑150 (MQ=255)
                                                                                  gAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCagccacacgaccagccgcgtgccgtgcactgcggctggggccggctgttga                                                                                                  <  1:828001‑M1/107‑52 (MQ=255)
                                                                                  gAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCagccacacgaccagccgcgtgccgtgcactgcggctggggccggctgttga                                                                                                  >  2:828001‑M1/1‑56 (MQ=255)
                                                                                  gAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCGGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGTCGGCGccgg                                                       >  1:464045/1‑148 (MQ=255)
                                                                                      aGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTTTGGCCTATCAACAGCCGAACCAAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCcg                                                   >  1:367251/1‑150 (MQ=255)
                                                                                        aTCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCcgcg                                                 >  2:800006/1‑150 (MQ=255)
                                                                                              ggCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGTCGCGcagcag                                           <  2:425612/150‑1 (MQ=255)
                                                                                                ccAGGGAAGCCGGGTGGGGGTGGGTGTGGCGTATTAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGGGTGGCTGGCTGGCGTCGCCGGCCAGGCGCGCCGGGAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGgc                                         <  2:431799/150‑1 (MQ=255)
                                                                                                         ccGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCCGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCAt                                >  2:442542/1‑150 (MQ=255)
                                                                                                                       gtgtGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACCGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATgg                  <  1:546642/150‑1 (MQ=255)
                                                                                                                            gCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTgg                                                                                                         >  1:344857‑M2/1‑56 (MQ=255)
                                                                                                                            gCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTgg                                                                                                         <  2:344857‑M2/58‑3 (MQ=255)
                                                                                                                            gCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCttt             >  1:264623/1‑150 (MQ=255)
                                                                                                                              cTATCAACAACCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTggctgttgataggccacacctaccccgacccggcttccctggccgaggatctgctcgacgagcacccgggcgaacgcgacatcgccctgtacgtgg           <  1:614305‑M2/150‑97 (MQ=255)
                                                                                                                               tATCAACAGCCGCCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCAt          <  1:326619/150‑1 (MQ=255)
                                                                                                                                aTCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATc         <  1:289424/150‑1 (MQ=255)
                                                                                                                                 tCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTggctgttgataggccacacctaccccgacccggcttccctggccgaggatctgctc                                                   >  2:828001‑M2/1‑51 (MQ=255)
                                                                                                                                 tCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTggctgttgataggccacacctaccccgacccggcttccctggccgaggatctgctc                                                   <  1:828001‑M2/107‑57 (MQ=255)
                                                                                                                                   aaCAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTggctgttgataggccacacctaccccgacccggcttccctggccgaggatctgctcgacgagcacccgggcgaacgcgacatcgccctgtacgtggccgca      <  2:340857‑M2/150‑102 (MQ=255)
                                                                                                                                       gccagccacacgaccagccgcgtgccgtgcactgcggctggggccggctgttgataggccacacctaccccgacccggcttccctggccgaggatctgctcgacgagcacccgggcgaacgcgacatcgccctgtacgtggccgcaccgc  >  2:652744‑M1/1‑3 (MQ=255)
                                                                                                                                       gCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGa  <  2:488120/150‑1 (MQ=255)
                                                                                                                                        ccagccacacgaccagccgcgtgccgtgcactgcggctggggccggctgttgataggc                                                                                             <  2:344857‑M1/58‑57 (MQ=255)
                                                                                                                                        ccagccacacgaccagccgcgtgccgtgcactgcggctggggccggctgttgataggc                                                                                             >  1:344857‑M1/1‑2 (MQ=255)
                                                                                                                                         |                                                                                                                                                   
ACAGCTGCTGAGGGGCCTGTGCCAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACGGCACGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGA  >  NC_002947/1949421‑1949705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.