New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1949558	28 (0.880)	4 (0.130)	4/238	NT	12.1%	coding (140/1746 nt)	PP_1749	acetyltransferase
	?	NC_002947	= 1949600	31 (1.020)					coding (98/1746 nt)	PP_1749	acetyltransferase

GCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTCCTTGTTCGCTCAGCCACAGGTTCAGCGCCGCCAGTT  >  NC_002947/1949454‑1949744                                                                                                                                                     |                                                                                                                                                 gcggtgcggCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTggc                                                                                                                                               >  2:652744‑M2/1‑147 (MQ=255)    gtgcggCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGc                                                                                                                                            >  2:632873/1‑150 (MQ=255)         gCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCg                                                                                                                                       >  1:342131/1‑150 (MQ=255)           cACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGcc                                                                                                                                     >  2:289424/1‑150 (MQ=255)                aCAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCa                                                                                                                                >  2:198073/1‑150 (MQ=255)                             gcgTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAg                                                                                                                   <  1:198073/150‑1 (MQ=255)                             gcgTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAg                                                                                                                   >  1:425612/1‑150 (MQ=255)                                    cccGGGTGGTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCg                                                                                                            <  1:511632/150‑1 (MQ=255)                                     ccGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGt                                                                                                           >  1:785803/1‑150 (MQ=255)                                      cGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTa                                                                                                          <  2:215908/150‑1 (MQ=255)                                          tGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGAc                                                                                                      <  1:243846/150‑1 (MQ=255)                                             tcgtcgAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGGTGCTGTCGCCGGCCAGGGGCGGCTGCAGGCGGACGAAGGGCggg                                                                                                   >  2:326619/1‑149 (MQ=255)                                                tcgAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGcc                                                                                                >  2:793350/1‑150 (MQ=255)                                                  gAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCATCAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTTCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTg                                                                                              >  2:756624/1‑150 (MQ=255)                                                  gAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCGGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGTCGGCGccgg                                                                                              >  1:464045/1‑148 (MQ=255)                                                      aGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTTTGGCCTATCAACAGCCGAACCAAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCcg                                                                                          >  1:367251/1‑150 (MQ=255)                                                        aTCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCcgcg                                                                                        >  2:800006/1‑150 (MQ=255)                                                              ggCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGTCGCGcagcag                                                                                  <  2:425612/150‑1 (MQ=255)                                                                ccAGGGAAGCCGGGTGGGGGTGGGTGTGGCGTATTAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGGGTGGCTGGCTGGCGTCGCCGGCCAGGCGCGCCGGGAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGgc                                                                                <  2:431799/150‑1 (MQ=255)                                                                         ccGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCCGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCAt                                                                       >  2:442542/1‑150 (MQ=255)                                                                                       gtgtGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACCGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATgg                                                         <  1:546642/150‑1 (MQ=255)                                                                                            gCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTgg                                                                                                                                                <  2:344857‑M2/58‑3 (MQ=255)                                                                                            gCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTgg                                                                                                                                                >  1:344857‑M2/1‑56 (MQ=255)                                                                                            gCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCttt                                                    >  1:264623/1‑150 (MQ=255)                                                                                              cTATCAACAACCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTggctgttgataggccacacctaccccgacccggcttccctggccgaggatctgctcgacgagcacccgggcgaacgcgacatcgccctgtacgtgg                                                  <  1:614305‑M2/150‑97 (MQ=255)                                                                                               tATCAACAGCCGCCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCAt                                                 <  1:326619/150‑1 (MQ=255)                                                                                                aTCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATc                                                <  1:289424/150‑1 (MQ=255)                                                                                                 tCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTggctgttgataggccacacctaccccgacccggcttccctggccgaggatctgctc                                                                                          >  2:828001‑M2/1‑51 (MQ=255)                                                                                                 tCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTggctgttgataggccacacctaccccgacccggcttccctggccgaggatctgctc                                                                                          <  1:828001‑M2/107‑57 (MQ=255)                                                                                                   aaCAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTggctgttgataggccacacctaccccgacccggcttccctggccgaggatctgctcgacgagcacccgggcgaacgcgacatcgccctgtacgtggccgca                                             <  2:340857‑M2/150‑102 (MQ=255)                                                                                                       gCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGa                                         <  2:488120/150‑1 (MQ=255)                                                                                                         cacgaCCAGCCGC‑GTGCCGT‑GCACTGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGgcgc                                                                                                 >  1:183408‑M1/6‑92 (MQ=255)                                                                                                         cacgaCCAGCCGC‑GTGC‑CGTGCACTGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGgcgc                                                                                                 <  2:183408‑M1/87‑1 (MQ=255)                                                                                                           gCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTcc                                     >  2:408527/1‑150 (MQ=255)                                                                                                              CCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATc                                                >  2:422509‑M1/1‑136 (MQ=255)                                                                                                              CCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATc                                                <  1:422509‑M1/136‑1 (MQ=255)                                                                                                               CAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTCCTTGt                                 >  2:342131‑M1/1‑150 (MQ=255)                                                                                                                 cagccgcgtgccgtgcactgcggctggTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGCCAATAAGCGAGGACATTGTCGTGCATCGGTCAGATTCCTTGt                                 >  2:8091‑M2/28‑150 (MQ=255)                                                                                                                  CCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAg                                                                                                         >  1:367193‑M1/1‑75 (MQ=255)                                                                                                                  CCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAg                                                                                                         <  2:367193‑M1/75‑1 (MQ=255)                                                                                                                    ccgcgtgccgtgcactgcggctggTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCg                                                                                                            >  2:715221‑M2/25‑72 (MQ=255)                                                                                                                    ccgcgtgccgtgcactgcggctggTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCg                                                                                                            <  1:715221‑M2/48‑1 (MQ=255)                                                                                                                    GCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTCCTTGTTCGCt                            >  1:632873‑M1/1‑150 (MQ=255)                                                                                                                               gcac‑gCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGc                                                                   <  2:280374/101‑1 (MQ=255)                                                                                                                               gcac‑gCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGc                                                                   >  1:280374/1‑101 (MQ=255)                                                                                                                                cac‑gCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTCCTTGTTCGCTCAGCCACAGGt                 <  1:561233/150‑1 (MQ=255)                                                                                                                                    gcggctggTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTCCTTGTTCGCTCAGCCACAGGTTCa              >  1:394968‑M2/9‑150 (MQ=255)                                                                                                                                               tgtgGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTCCTTGTTCGCTCAGCCACAGGTTCAGCGCCGCCAGt   >  2:511077/1‑150 (MQ=255)                                                                                                                                                gtgGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTCCtt                                   <  1:262927/117‑1 (MQ=255)                                                                                                                                                gtgGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTCCtt                                   >  2:262927/1‑117 (MQ=255)                                                                                                                                                gtgGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGATGGCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTCCTTGTTCGCTCAGCCACAGGTTCAGCGCCGCCAGtt  <  1:8091/150‑1 (MQ=255)                                                                                                                                                     tggctgCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTCCtt                                   >  1:237218/1‑112 (MQ=255)                                                                                                                                                     tggctgCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTCCtt                                   <  2:237218/112‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                 GCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTCCTTGTTCGCTCAGCCACAGGTTCAGCGCCGCCAGTT  >  NC_002947/1949454‑1949744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.