New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2130414	23 (0.730)	3 (0.100)	3/236	NT	9.9%	coding (1828/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	= 2130479	33 (1.100)					coding (1763/2496 nt)	fimD	type I pili subunit FimD

TCCAGCCCGTCAGCATGCAGCAGCACCGCACCACTGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2130260‑2130414 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggctACAGCCAGCGTGCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGCTGAGCTACAGCACCAGCCTGAGCCGTGACGAACACGCCCGCAAGACAGCGGCACTGTCGCTCGGCCATCAGGCCCCCTATGCCAGCGTGAGTGCTGGCTATACC  <  NC_002947/2130479‑2130331                                                                                                                                                                                                                                                                                                                  TCCAGCCCGTCAGCATGCAGCAGCACCGCACCACTGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCA                                                                                                                                                            >  1:238196/1‑150   CAGCCCGTCAGCATGCAGCAGCACCGCACCACTGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACG                                                                                                                                                          >  2:196308/1‑150                                                                         GTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTACAGCCAGCGTGCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGCTGA                                                                                                       >  1:292804/1‑131                                                                         GTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTACAGCCAGCGTGCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGCTGA                                                                                                       <  2:292804/131‑1                                                                                    ACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTACAGCCAGCGTGCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGCTGAGCTACAGCACCAGCCTGAGCCGTGACGAAC                                                                         <  1:808953/150‑1                                                                                                                                                         GCTACAGCCAGCGTGCCACGCTCAGCGGCAGCGACA‑‑GCGCGCGCGCTGAGCTACAGCACCAGCCTGAGCCGTGACGAACACGCCCGCAAGACAGCGGCACTGTCGCTCGGCCATCAGGCCCCCTATGCCAGCGTGAGTGCTGGCTATACC  >  2:238196/1‑150                                                                                                                                                          CTACAGCCAGCGTGCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGCTGAGCTACAGCACCATCCTGAGCCGTGACGAACACGCCCGCAAGACAGCGGCACTGTCGCTCGGCCATCAGGCCCCCTATGCCAGCGTGAGTGCTGGCTATAC   <  1:650334/150‑1                                                                                                                                                                                                                                                                                                                  TCCAGCCCGTCAGCATGCAGCAGCACCGCACCACTGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2130260‑2130414 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggctACAGCCAGCGTGCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGCTGAGCTACAGCACCAGCCTGAGCCGTGACGAACACGCCCGCAAGACAGCGGCACTGTCGCTCGGCCATCAGGCCCCCTATGCCAGCGTGAGTGCTGGCTATACC  <  NC_002947/2130479‑2130331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.