New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2130414	23 (0.730)	3 (0.100)	3/236	NT	9.9%	coding (1828/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	= 2130479	33 (1.100)					coding (1763/2496 nt)	fimD	type I pili subunit FimD

CATGCAGCAGCACCGCACCACTGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACT  >  NC_002947/2130273‑2130563                                                                                                                                              |                                                                                                                                                      cATGCAGCAGCACCGCACCACTGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTgg                                                                                                                                               <  1:196308/150‑1 (MQ=255)  aTGCAGCAGCACCGCACCACTGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGt                                                                                                                                              >  2:416864/1‑150 (MQ=255)       gcagcaCCGCACCACTGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGt                                                                                                                                         >  2:217647/1‑150 (MQ=255)                      tGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCAGAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAgcgcgcgcg                                                                                                                          >  2:142815/1‑150 (MQ=255)                                            gTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGt                                                                                                    <  2:223380/150‑1 (MQ=255)                                            gTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGt                                                                                                    >  1:733602/1‑150 (MQ=255)                                              aGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTgg                                                                                                  <  1:420307/150‑1 (MQ=255)                                                      gCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGAGACCTCTCTGCCGCTGAGCGTGGCACgctgg                                                                                          <  1:582495/150‑1 (MQ=255)                                                           ggTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGC‑‑TGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTagc                                                                                   >  2:238196‑M2/1‑147 (MQ=255)                                                            gTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTacagccagcgtgccacgctcagcggcagcgacagcgcgcgcgcgctga                                                                                                       <  2:292804‑M1/131‑49 (MQ=255)                                                            gTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTacagccagcgtgccacgctcagcggcagcgacagcgcgcgcgcgctga                                                                                                       >  1:292804‑M1/1‑83 (MQ=255)                                                            gTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGATGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTag                                                                                    <  1:650334‑M2/150‑3 (MQ=255)                                                                 gCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGtt                                                                               >  2:283565/1‑150 (MQ=255)                                                                       aCTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTacagccagcgtgccacgctcagcggcagcgacagcgcgcgcgcgctgagctacagcaccagcctgagccgtgacgaac                                                                         <  1:808953‑M1/150‑79 (MQ=255)                                                                       aCTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACgctg                                                                                           <  2:316830/132‑1 (MQ=255)                                                                       aCTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACgctg                                                                                           >  1:316830/1‑132 (MQ=255)                                                                         tCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTtgt                                                                       >  1:623407/1‑150 (MQ=255)                                                                           aCGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGtgc                                                                     >  1:482615/1‑150 (MQ=255)                                                                                   aTAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTGCCGTATCCTTAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGtg                                                             >  2:663410/1‑149 (MQ=255)                                                                                    tAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCg                                                            >  2:192538/1‑150 (MQ=255)                                                                                        gggCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAgg                                                        <  2:482615/150‑1 (MQ=255)                                                                                          gCCTGATGGCCGAGCGACAGTGCCGCTCTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTc                                                      <  1:217647/150‑1 (MQ=255)                                                                                                       gCGACAGTGCGGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCATGGCACGCCGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGTTCGCATTGGCGCGGt                                         <  2:371483/150‑1 (MQ=255)                                                                                                               gCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGaaa                                 <  1:142815/150‑1 (MQ=255)                                                                                                                ccGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAAt                                >  2:152325/1‑150 (MQ=255)                                                                                                                  gCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGtt                                                                         <  1:468671/107‑1 (MQ=255)                                                                                                                  gCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGtt                                                                         >  2:468671/1‑107 (MQ=255)                                                                                                                    tGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGATGTCGGCATTGGCGCGGTGACCGAAATGCaa                            <  1:663410/150‑1 (MQ=255)                                                                                                                                  gtTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTagccgtgacgaacacgcccgcaagacagcggcactgtcgctcggccatcaggccccctatgccagcgtgagt              <  1:808953‑M2/150‑73 (MQ=255)                                                                                                                                            gCTacagccagcgtgccacgctcagcggcagcgacagcgcgcgcgctgagctacagcaccagcctgagccgtgacgaacacgcccgcaagacagcggcactgtcgctcggccatcaggccccctatgccagcgtgagtgctggctatacc    >  2:238196‑M1/1‑3 (MQ=255)                                                                                                                                             cTacagccagcgtgccacgctcagcggcagcgacagcgcgcgcgcgctgagctacagcaccatcctgagccgtgacgaacacgcccgcaagacagcggcactgtcgctcggccatcaggccccctatgccagcgtgagtgctggctatac   <  1:650334‑M1/150‑149 (MQ=255)                                                                                                                                             cTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAAc   <  1:283565/150‑1 (MQ=255)                                                                                                                                              tCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGc        >  2:665251/1‑144 (MQ=255)                                                                                                                                              tCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGc        <  1:665251/144‑1 (MQ=255)                                                                                                                                              tCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACt  >  1:407706/1‑150 (MQ=255)                                                                                                                                              |                                                                                                                                                      CATGCAGCAGCACCGCACCACTGGCATTCAATGACAGGCTGCGGTAGTTGTCGGCTTCGGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACT  >  NC_002947/2130273‑2130563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.