New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2130414	23 (0.730)	3 (0.100)	3/236	NT	9.9%	coding (1828/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	= 2130479	33 (1.100)					coding (1763/2496 nt)	fimD	type I pili subunit FimD

GGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGGTTGTAGCC  >  NC_002947/2130331‑2130618                                                                                                                                                     |                                                                                                                                            ggTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGC‑‑TGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTagc                                                                                                                                          >  2:238196‑M2/1‑147 (MQ=255)  gTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGATGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTag                                                                                                                                           <  1:650334‑M2/150‑3 (MQ=255)       gCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGtt                                                                                                                                      >  2:283565/1‑150 (MQ=255)               tCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTtgt                                                                                                                              >  1:623407/1‑150 (MQ=255)                 aCGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGtgc                                                                                                                            >  1:482615/1‑150 (MQ=255)                         aTAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTGCCGTATCCTTAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGtg                                                                                                                    >  2:663410/1‑149 (MQ=255)                          tAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCg                                                                                                                   >  2:192538/1‑150 (MQ=255)                              gggCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAgg                                                                                                               <  2:482615/150‑1 (MQ=255)                                gCCTGATGGCCGAGCGACAGTGCCGCTCTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTc                                                                                                             <  1:217647/150‑1 (MQ=255)                                             gCGACAGTGCGGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCATGGCACGCCGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGTTCGCATTGGCGCGGt                                                                                                <  2:371483/150‑1 (MQ=255)                                                     gCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGaaa                                                                                        <  1:142815/150‑1 (MQ=255)                                                      ccGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAAt                                                                                       >  2:152325/1‑150 (MQ=255)                                                        gCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGtt                                                                                                                                <  1:468671/107‑1 (MQ=255)                                                        gCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGtt                                                                                                                                >  2:468671/1‑107 (MQ=255)                                                          tGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGATGTCGGCATTGGCGCGGTGACCGAAATGCaa                                                                                   <  1:663410/150‑1 (MQ=255)                                                                        gtTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTagccgtgacgaacacgcccgcaagacagcggcactgtcgctcggccatcaggccccctatgccagcgtgagt                                                                     <  1:808953‑M2/150‑73 (MQ=255)                                                                                   cTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAAc                                                          <  1:283565/150‑1 (MQ=255)                                                                                    tCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGc                                                               >  2:665251/1‑144 (MQ=255)                                                                                    tCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGc                                                               <  1:665251/144‑1 (MQ=255)                                                                                    tCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACt                                                         >  1:407706/1‑150 (MQ=255)                                                                                      aGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAgg                                                                                 <  2:163667/124‑1 (MQ=255)                                                                                      aGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAgg                                                                                 >  1:163667/1‑124 (MQ=255)                                                                                      aGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGACGTCACCGCTGGTTTCATGCTGGCTGTAGCCGTTGGTGGGGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGa                                                       <  1:192538/150‑1 (MQ=255)                                                                                          tGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCaa                                                                                   <  2:126946/118‑1 (MQ=255)                                                                                          tGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCaa                                                                                   >  1:126946/1‑118 (MQ=255)                                                                                           ggTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAGTGCAAGTGTAGCGTCACGCTCAGTCCAAACTGACGATc                                                  <  2:650334/150‑1 (MQ=255)                                                                                            gTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCa                                                 >  2:570023/1‑150 (MQ=255)                                                                                                tGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGc                                             >  1:108932/1‑150 (MQ=255)                                                                                                      tCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTagccgtgacgaacacgcccgcaagacagcggcactgtcgctcggccatcaggccccctatgccagcgtgagtgctggctatac                                                          <  2:292804‑M2/131‑84 (MQ=255)                                                                                                      tCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTagccgtgacgaacacgcccgcaagacagcggcactgtcgctcggccatcaggccccctatgccagcgtgagtgctggctatac                                                          >  1:292804‑M2/1‑48 (MQ=255)                                                                                                      tCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAAc                                       >  1:463798/1‑150 (MQ=255)                                                                                                      tCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAAc                                       <  2:623407/150‑1 (MQ=255)                                                                                                          agcgcgcgcgcTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGAACAAAATGCAAGGGGAACGTAAATCTCAGGCCAAACTGACGATCCTTGCCGAAAcggtc                                   >  2:416264/2‑150 (MQ=255)                                                                                                                   gcTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGa                          >  2:267787/1‑150 (MQ=255)                                                                                                                       tCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATtgt                      <  2:407706/150‑1 (MQ=255)                                                                                                                          cTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAg                   <  2:108932/150‑1 (MQ=255)                                                                                                                           tGCCGCTGAGCGTGGCACTCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGAcc                                                                                            <  2:124275/76‑1 (MQ=255)                                                                                                                           tGCCGCTGAGCGTGGCACTCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGAcc                                                                                            >  1:124275/1‑76 (MQ=255)                                                                                                                                           aCGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGGTTGTAGcc  >  1:194210/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                            GGTATAGCCAGCACTCACGCTGGCATAGGGGGCCTGATGGCCGAGCGACAGTGCCGCTGTCTTGCGGGCGTGTTCGTCACGGCTCAGGCTGGTGCTGTAGCTCAGCGCGCGCGCGCTGTCGCTGCCGCTGAGCGTGGCACGCTGGCTGTAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGGTTGTAGCC  >  NC_002947/2130331‑2130618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.