New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2336712 =	28 (0.880)	4 (0.140)	4/230	NT	14.0%	coding (71/204 nt)	PP_5500	hypothetical protein
	?	NC_002947	2336750 =	23 (0.780)					coding (33/204 nt)	PP_5500	hypothetical protein

GCCAAGCCTTGCATGTCGCGGCGCATACGTGCAAGGCTGAAAAAGGATCACCCATGACGAAAAGGAAGCAAAGCACCTCATGCTTGGAATCACACGTATCCATCGCTATTTGCGCCCACTGCCTGCAAAACCGACTGCAGCCAGTGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2336861‑2336712 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtgggcgCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCTTGGCCTCCCGCTCGCATTACGCAACAAGGTGAACCCCAATG  >  NC_002947/2336750‑2336898                                                                                                                                                                                                                                                                                                             GCCAAGCCTTGCATGTCGCGGCGCATACGTGCAAGGCTGAAAAAGGATCACCCATGACGAAAAGGAAGCAAAGCACCTCATGCTTGGAATCACACGTATCCATCGCTATTTGCGCCCACTGCCTGCAAAACCGACTGCAGCCAGTGGGCG                                                                                                                                                       >  1:588954/1‑150                                                    CCATGACGAAAAGGAAGCAAAGCACCTCATGCTTGGAATCACACGTATCCATCGCTATTTGCGCCCACTGCCTGCAAAACCGACTGCAGCCAGTGG                                                                                                                                                          <  1:205307/96‑1                                                    CCATGACGAAAAGGAAGCAAAGCACCTCATGCTTGGAATCACACGTATCCATCGCTATTTGCGCCCACTGCCTGCAAAACCGACTGCAGCCAGTGG                                                                                                                                                          >  2:205307/1‑96                                                                                            ACACGTATCCATCGCTATTTGCGCCCACTGCCTGCAAAACCGACTGCAGCCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGG                                                                                          >  1:722375/1‑120                                                                                            ACACGTATCCATCGCTATTTGCGCCCACTGCCTGCAAAACCGACTGCAGCCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGG                                                                                          <  2:722375/120‑1                                                                                              ACGTATCCATCGCTATTTGCGCCCACTGCCTGCAAAACCGACTGCAGCCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTT                                                                                                    <  1:784286/108‑1                                                                                              ACGTATCCATCGCTATTTGCGCCCACTGCCTGCAAAACCGACTGCAGCCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTT                                                                                                    >  2:784286/1‑108                                                                                                                                               AGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCTTGGCCTCCCGCTCGCATTACGCAACAAG               >  1:603582/1‑144                                                                                                                                               AGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCTTGGCCTCCCGCTCGCATTACGCAACAAG               <  2:603582/144‑1                                                                                                                                                      GCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCTTGGCCTCCCGCTCGCATTACGCAACAAGGTGAACCCCAATG  >  2:283498/1‑150                                                                                                                                                                                                                                                                                                             GCCAAGCCTTGCATGTCGCGGCGCATACGTGCAAGGCTGAAAAAGGATCACCCATGACGAAAAGGAAGCAAAGCACCTCATGCTTGGAATCACACGTATCCATCGCTATTTGCGCCCACTGCCTGCAAAACCGACTGCAGCCAGTGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2336861‑2336712 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtgggcgCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCTTGGCCTCCCGCTCGCATTACGCAACAAGGTGAACCCCAATG  >  NC_002947/2336750‑2336898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.