New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2336712 =	28 (0.880)	4 (0.140)	4/230	NT	14.0%	coding (71/204 nt)	PP_5500	hypothetical protein
	?	NC_002947	2336750 =	23 (0.780)					coding (33/204 nt)	PP_5500	hypothetical protein

GGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCTTGGCCTCCCGCTCGCATTACGCAACAAGGTGAACCCCAATG  >  NC_002947/2336607‑2336898                                                                                                                                                |                                                                                                                                                     ggACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAg                                                                                                                                                <  2:624563/150‑1 (MQ=255)     gCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGAt                                                                                                                                            <  1:378813/150‑1 (MQ=255)         aGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGACAGTGGGCGCAAATAGCGAt                                                                                                                                            >  2:840851/1‑146 (MQ=255)         aGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGACAGTGGGCGCAAATAGCGAt                                                                                                                                            <  1:840851/146‑1 (MQ=255)             gTGACGCAGAGGTAAGGCGGGGCGGAGCGCGGCGTACGGAATAGGTGGGCAACCGGTGCGGCGAGGTGGGTGGCGCGTCTGCGAGTTTGGCCGGGCTCACTTGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACgt                                                                                                                                    >  1:195910/1‑150 (MQ=255)                       ggTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGCGGTTGGCGACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCaa                                                                                                                          <  2:566571/150‑1 (MQ=255)                              cggggcggAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAg                                                                                                                   <  1:819981/150‑1 (MQ=255)                                  gcggAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGtgc                                                                                                               >  1:189945/1‑150 (MQ=255)                                     gAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGtacttt                                                                                                            >  2:565834/1‑150 (MQ=255)                                          gggCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTc                                                                                                       <  1:250465/150‑1 (MQ=255)                                             ccatgacgaaaaggaagcaaagcacctcatgcttggaatcacacgtatccatcgctatttgCGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACgtgt                                                                                                                                  <  2:722375‑M1/59‑1 (MQ=255)                                             ccatgacgaaaaggaagcaaagcacctcatgcttggaatcacacgtatccatcgctatttgCGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACgtgt                                                                                                                                  >  1:722375‑M1/62‑120 (MQ=255)                                                gCAGAGGAGGTTGGCAACCGTTGCGGCGCGGTAGGTGGAGCGGTTGGTCGTGAGGTCACGCCCACTGGCTGCAATCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTc                                                                                                 <  1:191882/150‑1 (MQ=255)                                                    aggaggTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCa                                                                                             <  2:195910/150‑1 (MQ=255)                                                       aaggaagcaaagcacctcatgcttggaatcacacgtatccatcgctatttgCGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACgt                                                                                                                                    <  1:784286‑M1/57‑1 (MQ=255)                                                       aaggaagcaaagcacctcatgcttggaatcacacgtatccatcgctatttgCGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACgt                                                                                                                                    >  2:784286‑M1/52‑108 (MQ=255)                                                               aaCCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATGCt                                                                                  >  1:585071/1‑150 (MQ=255)                                                                  cGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCtttt                                                                               <  1:222733/150‑1 (MQ=255)                                                                    ttGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTc                                                                             <  1:774308/150‑1 (MQ=255)                                                                                 ggtggCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTa                                                                >  2:591619/1‑150 (MQ=255)                                                                                     acacgtatccatcgctatttgcgcccactgcctgcaaaaccgactgcagccagtgggcgCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATgg                                                                                          >  1:722375‑M2/60‑120 (MQ=255)                                                                                     acacgtatccatcgctatttgcgcccactgcctgcaaaaccgactgcagccagtgggcgCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATgg                                                                                          <  2:722375‑M2/61‑1 (MQ=255)                                                                                       gcgTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGcgcc                                                          >  1:420777/1‑150 (MQ=255)                                                                                       acgtatccatcgctatttgcgcccactgcctgcaaaaccgactgcagccagtgggcgCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCtt                                                                                                    >  2:784286‑M2/58‑108 (MQ=255)                                                                                       acgtatccatcgctatttgcgcccactgcctgcaaaaccgactgcagccagtgggcgCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCtt                                                                                                    <  1:784286‑M2/51‑1 (MQ=255)                                                                                                   gAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTAt                                                               >  2:262843/1‑133 (MQ=255)                                                                                                   gAGGTCACGCCCACTGGCTGCAGGCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTAt                                                               <  1:262843/133‑1 (MQ=255)                                                                                                       tCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCtt                                          <  1:591619/150‑1 (MQ=255)                                                                                                         aCGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCTTgg                                        >  2:169974/1‑150 (MQ=255)                                                                                                          CGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCTTGGc                                       >  1:588954‑M1/1‑150 (MQ=255)                                                                                                             CCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATgg                                                                                          >  2:205307‑M1/1‑96 (MQ=255)                                                                                                             CCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATgg                                                                                          <  1:205307‑M1/96‑1 (MQ=255)                                                                                                                           cGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCTTGGCCTCCCGCTCGCATTACg                      <  2:189945/150‑1 (MQ=255)                                                                                                                            ggTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCTTGGCCTCCCGCTCGCATTActc                     <  2:270690/150‑3 (MQ=255)                                                                                                                                        agtgggcgCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCTTGGCCTCCCGCTCGCATTACGCAACAAg               <  2:603582‑M2/136‑1 (MQ=255)                                                                                                                                        agtgggcgCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCTTGGCCTCCCGCTCGCATTACGCAACAAg               >  1:603582‑M2/9‑144 (MQ=255)                                                                                                                                               gCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCTTGGCCTCCCGCTCGCATTACGCAACAAGGTGAACCCCAATg  >  2:283498‑M2/2‑150 (MQ=255)                                                                                                                                                |                                                                                                                                                     GGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCTTGGCCTCCCGCTCGCATTACGCAACAAGGTGAACCCCAATG  >  NC_002947/2336607‑2336898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.