New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2336712 =	28 (0.880)	4 (0.140)	4/230	NT	14.0%	coding (71/204 nt)	PP_5500	hypothetical protein
	?	NC_002947	2336750 =	23 (0.780)					coding (33/204 nt)	PP_5500	hypothetical protein

GCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCTTGGC  >  NC_002947/2336563‑2336861                                                                                                                                                      |                                                                                                                                                      cattggggttcaccttgttgcgtaatgcgagcgggaggccaagccttgcatgtcgcggcgcatacgtgcaaggctgaaaaaggatcacccatgacgaaaaggaagcaaagcacctcatgcttggaatcacacgtatccatcgctatttgc                                                                                                                                                       >  2:283498‑M1/150‑150 (MQ=255)           gggCAGTCAGGGCGGGGGCACGCGTGCGACAGGGGGACGCTCAGGAGGGACGCAGAGGTAAGGCGGGCCGGAGGGTGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGc                                                                                                                                             <  2:322141/150‑1 (MQ=255)              cttgttgcgtaatgcgagcgggaggccaagccttgcatgtcgcggcgcatacgtgcaaggctgaaaaaggatcacccatgacgaaaaggaagcaaagcacctcatgcttggaatcacacgtatccatcgctatttgCGCCCACt                                                                                                                                                >  1:603582‑M1/137‑144 (MQ=255)              cttgttgcgtaatgcgagcgggaggccaagccttgcatgtcgcggcgcatacgtgcaaggctgaaaaaggatcacccatgacgaaaaggaagcaaagcacctcatgcttggaatcacacgtatccatcgctatttgCGCCCACt                                                                                                                                                <  2:603582‑M1/8‑1 (MQ=255)                gTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAg                                                                                                                                        <  1:596679/150‑1 (MQ=255)                   aGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGCGCCGGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGCGGTCACGCCCACTGGCTGCAGTCg                                                                                                                                     >  1:270690/1‑150 (MQ=255)                   aGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCg                                                                                                                                     <  1:809205/150‑1 (MQ=255)                    ggTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCgg                                                                                                                                    <  1:183301/150‑1 (MQ=255)                         ggggCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTg                                                                                                                               <  1:503947/150‑1 (MQ=255)                           ggCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTgca                                                                                                                             >  1:266887/1‑150 (MQ=255)                                acGTGCGTCAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGGGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTgcaggcag                                                                                                                        >  2:250465/1‑150 (MQ=255)                                      gACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGgcg                                                                                                                  >  2:774308/1‑150 (MQ=255)                                             ggACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAg                                                                                                           <  2:624563/150‑1 (MQ=255)                                                 gCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGAt                                                                                                       <  1:378813/150‑1 (MQ=255)                                                     aGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGACAGTGGGCGCAAATAGCGAt                                                                                                       >  2:840851/1‑146 (MQ=255)                                                     aGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGACAGTGGGCGCAAATAGCGAt                                                                                                       <  1:840851/146‑1 (MQ=255)                                                         gTGACGCAGAGGTAAGGCGGGGCGGAGCGCGGCGTACGGAATAGGTGGGCAACCGGTGCGGCGAGGTGGGTGGCGCGTCTGCGAGTTTGGCCGGGCTCACTTGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACgt                                                                                               >  1:195910/1‑150 (MQ=255)                                                                   ggTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGCGGTTGGCGACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCaa                                                                                     <  2:566571/150‑1 (MQ=255)                                                                          cggggcggAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAg                                                                              <  1:819981/150‑1 (MQ=255)                                                                              gcggAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGtgc                                                                          >  1:189945/1‑150 (MQ=255)                                                                                 gAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGtacttt                                                                       >  2:565834/1‑150 (MQ=255)                                                                                      gggCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTc                                                                  <  1:250465/150‑1 (MQ=255)                                                                                         ccatgacgaaaaggaagcaaagcacctcatgcttggaatcacacgtatccatcgctatttgCGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACgtgt                                                                                             <  2:722375‑M1/59‑1 (MQ=255)                                                                                         ccatgacgaaaaggaagcaaagcacctcatgcttggaatcacacgtatccatcgctatttgCGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACgtgt                                                                                             >  1:722375‑M1/62‑120 (MQ=255)                                                                                            gCAGAGGAGGTTGGCAACCGTTGCGGCGCGGTAGGTGGAGCGGTTGGTCGTGAGGTCACGCCCACTGGCTGCAATCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTc                                                            <  1:191882/150‑1 (MQ=255)                                                                                                aggaggTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCa                                                        <  2:195910/150‑1 (MQ=255)                                                                                                   aaggaagcaaagcacctcatgcttggaatcacacgtatccatcgctatttgCGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACgt                                                                                               >  2:784286‑M1/52‑108 (MQ=255)                                                                                                   aaggaagcaaagcacctcatgcttggaatcacacgtatccatcgctatttgCGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACgt                                                                                               <  1:784286‑M1/57‑1 (MQ=255)                                                                                                           aaCCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATGCt                                             >  1:585071/1‑150 (MQ=255)                                                                                                              cGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCtttt                                          <  1:222733/150‑1 (MQ=255)                                                                                                                ttGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTc                                        <  1:774308/150‑1 (MQ=255)                                                                                                                             ggtggCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTa                           >  2:591619/1‑150 (MQ=255)                                                                                                                                   gcgTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGcgcc                     >  1:420777/1‑150 (MQ=255)                                                                                                                                               gAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTAt                          >  2:262843/1‑133 (MQ=255)                                                                                                                                               gAGGTCACGCCCACTGGCTGCAGGCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTAt                          <  1:262843/133‑1 (MQ=255)                                                                                                                                                   tCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCtt     <  1:591619/150‑1 (MQ=255)                                                                                                                                                     aCGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCTTgg   >  2:169974/1‑150 (MQ=255)                                                                                                                                                      CGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCTTGGc  >  1:588954‑M1/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      GCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGCGAGGTGGGTGGCGCGTTTGGCCTTGAGGTCACGCCCACTGGCTGCAGTCGGTTTTGCAGGCAGTGGGCGCAAATAGCGATGGATACGTGTGATTCCAAGCATGAGGTGCTTTGCTTCCTTTTCGTCATGGGTGATCCTTTTTCAGCCTTGCACGTATGCGCCGCGACATGCAAGGCTTGGC  >  NC_002947/2336563‑2336861

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.