New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2379610 =	30 (0.950)	3 (0.100)	3/242	NT	9.2%	intergenic (+22/‑68)	cmpX/PP_2088	protein CmpX/RNA polymerase sigma factor SigX
	?	NC_002947	2379652 =	30 (0.970)					intergenic (+64/‑26)	cmpX/PP_2088	protein CmpX/RNA polymerase sigma factor SigX

CTCCTCATGCGAACGCGCCACCAACTCTTCGTCTGTGAGCTCGCGGGGGTCATAGCGCATGGGCGGCGAATGAACTTTATTCAAAACGGATCTGGCCGACAGTCAGGTCAATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2379761‑2379610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGG  >  NC_002947/2379652‑2379759                                                                                                                                                                                                                                                                      CTCCTCATGCGAACGCGCCACCAACTCTTCGTCTGTGAGCTCGCGGGGGTCATAGCGCATGGGCGGCGAATGAACTTTATTCAAAACGGATCTGGCCGACAGTCAGGTCAATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGC                                                                                                                >  1:685280/1‑150                                                                                                              AATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGCATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCT                                     <  1:629305/116‑1                                                                                                              AATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGCATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCT                                     >  2:629305/1‑116                                                                                                               ATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGCATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGG  >  2:614999/1‑150                                                                                                                                                                                                                                                                      CTCCTCATGCGAACGCGCCACCAACTCTTCGTCTGTGAGCTCGCGGGGGTCATAGCGCATGGGCGGCGAATGAACTTTATTCAAAACGGATCTGGCCGACAGTCAGGTCAATGTCGCCGCGCGACCCCGTGGGTCGAATTTCGCGGCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2379761‑2379610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGG  >  NC_002947/2379652‑2379759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.