New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2379610 =	30 (0.950)	3 (0.100)	3/242	NT	9.2%	intergenic (+22/‑68)	cmpX/PP_2088	protein CmpX/RNA polymerase sigma factor SigX
	?	NC_002947	2379652 =	30 (0.970)					intergenic (+64/‑26)	cmpX/PP_2088	protein CmpX/RNA polymerase sigma factor SigX

TCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGA  >  NC_002947/2379473‑2379757                                                                                                                                          |                                                                                                                                                    tCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTATCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGaa                                                                                                                                         >  2:806231/1‑150 (MQ=255)       ggCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTATCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGa                                                                                                                                   <  1:806231/150‑1 (MQ=255)        gCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGAc                                                                                                                                  <  2:405529/150‑1 (MQ=255)           tatCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCa                                                                                                                               >  1:499008/1‑150 (MQ=255)                    gaTCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTcgc                                                                                                                      >  1:658157/1‑150 (MQ=255)                       cGGTACGGTGAAGACGCCGCTGCTGACCGGAGATCGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTcgcgcg                                                                                                                   <  2:822228/150‑1 (MQ=255)                          tACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCgcggcg                                                                                                                >  1:508403/1‑150 (MQ=255)                             ggTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACa                                                                                                             >  1:242512/1‑150 (MQ=255)                              cctcatgcgaacgcgccaccaactcttcgtctgtgagctcgcgggggtcatagcgcatgggcggcgaatgaactttattcaaaacggatctggccgacagtcaggtcaATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACAt                                                                                                            >  2:614999‑M1/109‑150 (MQ=255)                                  aGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGAc                                                                                                        <  2:411640/150‑1 (MQ=255)                                      gacgCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATgc                                                                                                                                                  >  1:667233/1‑104 (MQ=255)                                      gacgCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATgc                                                                                                                                                  <  2:667233/104‑1 (MQ=255)                                                 ccGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAg                                                                                         >  1:611185/1‑150 (MQ=255)                                                   gatgatGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGAt                                                                                       <  2:611185/150‑1 (MQ=255)                                                            gAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGa                                                                              <  2:658157/150‑1 (MQ=255)                                                                tGGTGTCACTAGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATaa                                                                          >  2:480253/1‑150 (MQ=255)                                                                 agctcgcgggggtcatagcgcatgggcggcgaatgaactttattcaaaacggatctggccgacagtcaggtcaATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACAtt                                                                                                           <  1:629305‑M1/43‑1 (MQ=255)                                                                 agctcgcgggggtcatagcgcatgggcggcgaatgaactttattcaaaacggatctggccgacagtcaggtcaATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACAtt                                                                                                           >  2:629305‑M1/74‑116 (MQ=255)                                                                  gtgtCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAg                                                                        >  2:680367/1‑150 (MQ=255)                                                                         tGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCTCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTc                                                                 >  2:322415/1‑150 (MQ=255)                                                                         tGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTc                                                                 <  2:499008/150‑1 (MQ=255)                                                                            cTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCTCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTcgcc                                                              <  1:322415/150‑1 (MQ=255)                                                                               aCCGCGAGCTGCTTGAACAGCGCGACAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACGGACGGCCAGAGCCGTTTTGAATAAAATTCATTCgcagcc                                                           >  2:311437/1‑150 (MQ=255)                                                                                  gcgACCTGCTTGAACAGCGCGTCGATAGCCGCTAACCGCACAACAGCTGTTAATGTATGCCGCCGCGAAATTCGTCCCACGGGGTCGCGTGGCGACATTGACCTGACTGTCGCCCAGATCCGTTTTGATTAAAGTTCATTCGCCGCCCAt                                                        <  1:311437/150‑1 (MQ=255)                                                                                      tgtgctTGAACATCGCGTCAATAGCCGCTACCTCCACAAAAGCTGTTAATGTATTCCGCCTCGAAATTCCACCCACGTGGTCGCGCTGCTACATTGACCTGACTGTCGGCCAGATCCGTTTTTAATAAAGTTCATTCGCCGCCCATgcgc                                                    <  2:284985/148‑1 (MQ=255)                                                                                                    gcgTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGa                                      <  1:680367/150‑1 (MQ=255)                                                                                                      gTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTc                                                                 <  1:749960/121‑1 (MQ=255)                                                                                                      gTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTc                                                                 >  2:749960/1‑121 (MQ=255)                                                                                                         aaTAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAg                                                                        >  1:1051/1‑111 (MQ=255)                                                                                                         aaTAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAg                                                                        <  2:1051/111‑1 (MQ=255)                                                                                                                gCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATCCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTGTATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGa                          >  1:733393/1‑150 (MQ=255)                                                                                                                  tAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCATGGGTTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAag                        >  1:19289/1‑150 (MQ=255)                                                                                                                      cGCACAAAAGCTGTTAATGTATGCCGCCGCGAAACTCGACCCACGGGTTCACGCGGCGACATTGACATGACTGTCGGCCAAATCCGTTTTGCATAAAGTTCATTCGCCCCCCATACGCTATCACCCCCGCGAGCCCACAGACAAAGAGtt                    >  2:60065/1‑150 (MQ=255)                                                                                                                       gCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTtg                   >  2:685280/1‑150 (MQ=255)                                                                                                                         acaAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTtggt                 >  1:849728/1‑150 (MQ=255)                                                                                                                                      aTGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGtttt                                                                                >  2:486501/1‑74 (MQ=255)                                                                                                                                      aTGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGtttt                                                                                <  1:486501/74‑1 (MQ=255)                                                                                                                                        gTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCTCCGCGAGCTCACAGACGAAGCGTTGGTGGCGCGTTCGCATga  >  1:596537/1‑150 (MQ=255)                                                                                                                                          |                                                                                                                                                    TCGAAGGGCATATCGAGGAGATCGGTACGGTGAAGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGA  >  NC_002947/2379473‑2379757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.