New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2379610 =	30 (0.950)	3 (0.100)	3/242	NT	9.2%	intergenic (+22/‑68)	cmpX/PP_2088	protein CmpX/RNA polymerase sigma factor SigX
	?	NC_002947	2379652 =	30 (0.970)					intergenic (+64/‑26)	cmpX/PP_2088	protein CmpX/RNA polymerase sigma factor SigX

AGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGGAGCTGTACCACGTTACCCGCGC  >  NC_002947/2379506‑2379781                                                                                                                                                   |                                                                                                                                  aGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGAc                                                                                                                                <  2:411640/150‑1 (MQ=255)                ccGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAg                                                                                                                 >  1:611185/1‑150 (MQ=255)                  gatgatGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGAt                                                                                                               <  2:611185/150‑1 (MQ=255)                           gAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGa                                                                                                      <  2:658157/150‑1 (MQ=255)                               tGGTGTCACTAGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATaa                                                                                                  >  2:480253/1‑150 (MQ=255)                                agctcgcgggggtcatagcgcatgggcggcgaatgaactttattcaaaacggatctggccgacagtcaggtcaATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACAtt                                                                                                                                   >  2:629305‑M1/74‑116 (MQ=255)                                agctcgcgggggtcatagcgcatgggcggcgaatgaactttattcaaaacggatctggccgacagtcaggtcaATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACAtt                                                                                                                                   <  1:629305‑M1/43‑1 (MQ=255)                                 gtgtCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAg                                                                                                >  2:680367/1‑150 (MQ=255)                                        tGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCTCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTc                                                                                         >  2:322415/1‑150 (MQ=255)                                        tGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTc                                                                                         <  2:499008/150‑1 (MQ=255)                                           cTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCTCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTcgcc                                                                                      <  1:322415/150‑1 (MQ=255)                                              aCCGCGAGCTGCTTGAACAGCGCGACAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACGGACGGCCAGAGCCGTTTTGAATAAAATTCATTCgcagcc                                                                                   >  2:311437/1‑150 (MQ=255)                                                 gcgACCTGCTTGAACAGCGCGTCGATAGCCGCTAACCGCACAACAGCTGTTAATGTATGCCGCCGCGAAATTCGTCCCACGGGGTCGCGTGGCGACATTGACCTGACTGTCGCCCAGATCCGTTTTGATTAAAGTTCATTCGCCGCCCAt                                                                                <  1:311437/150‑1 (MQ=255)                                                     tgtgctTGAACATCGCGTCAATAGCCGCTACCTCCACAAAAGCTGTTAATGTATTCCGCCTCGAAATTCCACCCACGTGGTCGCGCTGCTACATTGACCTGACTGTCGGCCAGATCCGTTTTTAATAAAGTTCATTCGCCGCCCATgcgc                                                                            <  2:284985/148‑1 (MQ=255)                                                                   gcgTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGa                                                              <  1:680367/150‑1 (MQ=255)                                                                     gTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTc                                                                                         <  1:749960/121‑1 (MQ=255)                                                                     gTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTc                                                                                         >  2:749960/1‑121 (MQ=255)                                                                        aaTAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAg                                                                                                >  1:1051/1‑111 (MQ=255)                                                                        aaTAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAg                                                                                                <  2:1051/111‑1 (MQ=255)                                                                               gCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATCCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTGTATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGa                                                  >  1:733393/1‑150 (MQ=255)                                                                                 tAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCATGGGTTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAag                                                >  1:19289/1‑150 (MQ=255)                                                                                     cGCACAAAAGCTGTTAATGTATGCCGCCGCGAAACTCGACCCACGGGTTCACGCGGCGACATTGACATGACTGTCGGCCAAATCCGTTTTGCATAAAGTTCATTCGCCCCCCATACGCTATCACCCCCGCGAGCCCACAGACAAAGAGtt                                            >  2:60065/1‑150 (MQ=255)                                                                                      gCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTtg                                           >  2:685280/1‑150 (MQ=255)                                                                                        acaAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTtggt                                         >  1:849728/1‑150 (MQ=255)                                                                                                     aTGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGtttt                                                                                                        >  2:486501/1‑74 (MQ=255)                                                                                                     aTGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGtttt                                                                                                        <  1:486501/74‑1 (MQ=255)                                                                                                       gTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCTCCGCGAGCTCACAGACGAAGCGTTGGTGGCGCGTTCGCATga                          >  1:596537/1‑150 (MQ=255)                                                                                                        aatgtcgccgcgcgaccccgtgggtcgaatttcgcggcggcatTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCt                                                           <  1:629305‑M2/73‑1 (MQ=255)                                                                                                        aatgtcgccgcgcgaccccgtgggtcgaatttcgcggcggcatTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCt                                                           >  2:629305‑M2/44‑116 (MQ=255)                                                                                                         atgtcgccgcgcgaccccgtgggtcgaatttcgcggcggcatTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATgagg                        >  2:614999‑M2/43‑150 (MQ=255)                                                                                                           GCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATgaggag                      >  1:685280‑M1/1‑150 (MQ=255)                                                                                                            ccgccgCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATACGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTTGCGCGTTCGCATGAGGAGc                     >  1:100423/1‑150 (MQ=255)                                                                                                               ccgcGAAATTCCACCCACGGGCTGGCGCGGTTACATTGACCTGACTGGCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGATATGACCCCCGCGAGCTTACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGGAGCTGt                  <  2:596537/150‑1 (MQ=255)                                                                                                                      aTTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGGAGCTGTACCACGt           <  2:849728/150‑1 (MQ=255)                                                                                                                               ccGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTATCGGAATTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGGAGCTGTACCACGTTACCCgcgc  <  1:480253/149‑1 (MQ=255)                                                                                                                               aCGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCAt                            >  1:295005/1‑124 (MQ=255)                                                                                                                               aCGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCAt                            <  2:295005/124‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                  AGACGACGCTGCTGACCGATGATGGCGAACTGGTGTCACTGGCTAACCGCGAGCTGCTTGAACAGCGCGTCAATAGCCGCTAACCGCACAAAAGCTGTTAATGTATGCCGCCGCGAAATTCGACCCACGGGGTCGCGCGGCGACATTGACCTGACTGTCGGCCAGATCCGTTTTGAATAAAGTTCATTCGCCGCCCATGCGCTATGACCCCCGCGAGCTCACAGACGAAGAGTTGGTGGCGCGTTCGCATGAGGAGCTGTACCACGTTACCCGCGC  >  NC_002947/2379506‑2379781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.