| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3276294 = | 22 (0.690) | 5 (0.170) | 5/236 | NT | 21.8% | coding (265/312 nt) | PP_2874 | hypothetical protein |
| ? | NC_002947 | 3276334 = | 15 (0.500) | coding (305/312 nt) | PP_2874 | hypothetical protein | |||||
ACAAGAATGGCCCGCTGCCCGCGAGCAGCAGGCAGTCAAGGTGATCGAACCGCTGAATTGAGGGTTCGCACCCTTACCAGAGCCCGGCCTGCATAGGCCGGGCTTTTTCATGCCTGGCGCCGCTGCAGACGGGTTTCCGGCAGAGGCAAGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3276448‑3276294‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCGGGCCATTCTTGTTGCAGGGTCTGCAGCACGCGGCCAACGAATTCAG > NC_002947/3276334‑3276482 ACAAGAATGGCCCGCTGCCCGCGAGCAGCAGGCAGTCAAGGTGATCGAACCGCTGAATTGAGGGTTCGCACCCTTACCAGAGCCCGGCCTGCATAGTCCGGGCTTTTTCATGCCTGGCGCCGCTGCAGACGGGTTTCCGGCAGAGGCAAG > 1:704677/1‑150 TTGAGGGTTCGCACCCTTACCAGAGCCCGGCCTGCATAGGCCGGGCTTTTTCATGCCTGGCGCCGCTGCAGACGGGTTTCCGGCAGAGGCAAG > 1:66587/1‑93 TTGAGGGTTCGCACCCTTACCAGAGCCCGGCCTGCATAGGCCGGGCTTTTTCATGCCTGGCGCCGCTGCAGACGGGTTTCCGGCAGAGGCAAG < 2:66587/93‑1 TGCCTGGCGCCGCTGCAGACGGGTTTCCGGCAGAGGCAAGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCGGG > 2:818665/1‑150 CTGGCGCCGCTGCAGACGGGTTTCCGGCAGAGGCAAGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCG < 1:716482/107‑1 CTGGCGCCGCTGCAGACGGGTTTCCGGCAGAGGCAAGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCG > 2:716482/1‑107 TGGCGCCGCTGCAGACGGGTTTCCGGCAGAGGCAAGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAA > 1:258518/1‑99 TGGCGCCGCTGCAGACGGGTTTCCGGCAGAGGCAAGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAA < 2:258518/99‑1 CCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCGGGCCATTCTTGTTGCAGGGTCTGCAGCACGCGGCCAACGAATTCA < 1:818665/150‑1 CCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCGGGCCATTCTTGTTGCAGGGTCTGCAGCACGCGGCCAACGAATTCA < 2:663752/150‑1 CCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGAGGGCCATTCTTGTTGCAGGGTCTGCAGCACGCGGCCAACGAATTCA < 1:199993/150‑1 CAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCGGGCCATTCTTGTTGCAGGGTCTGCAGCACGCGGCCAACGAATTCAG > 1:699625/1‑150 ACAAGAATGGCCCGCTGCCCGCGAGCAGCAGGCAGTCAAGGTGATCGAACCGCTGAATTGAGGGTTCGCACCCTTACCAGAGCCCGGCCTGCATAGGCCGGGCTTTTTCATGCCTGGCGCCGCTGCAGACGGGTTTCCGGCAGAGGCAAGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3276448‑3276294‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCGGGCCATTCTTGTTGCAGGGTCTGCAGCACGCGGCCAACGAATTCAG > NC_002947/3276334‑3276482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |