New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3276294 =	22 (0.690)	5 (0.170)	5/236	NT	21.8%	coding (265/312 nt)	PP_2874	hypothetical protein
	?	NC_002947	3276334 =	15 (0.500)					coding (305/312 nt)	PP_2874	hypothetical protein

TGTCGCGCCTGGGGGCGACGCAGCTGTTTCTGGGGTTGTACGCCGGGGATGGGCGGGCGTTGCTGGAAGAGTATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCGGGC  >  NC_002947/3276145‑3276439                                                                                                                                                      |                                                                                                                                                  ctgaattcgttggccgcgtgctgcagaccctgcaacaagaatggcccgctgcccgcgagcagcaggcagtcaaggtgatcgaaccgctgaattgagggttcgcacccttaccagagcccggcctgcataggccgggctttttcatgcctg                                                                                                                                                   >  1:699625‑M1/150‑150 (MQ=255)  tgaattcgttggccgcgtgctgcagaccctgcaacaagaatggccctctgcccgcgagcagcaggcagtcaaggtgatcgaaccgctgaattgagggttcgcacccttaccagagcccggcctgcataggccgggctttttcatgcctgg                                                                                                                                                  <  1:199993‑M1/2‑1 (MQ=255)  tgaattcgttggccgcgtgctgcagaccctgcaacaagaatggcccgctgcccgcgagcagcaggcagtcaaggtgatcgaaccgctgaattgagggttcgcacccttaccagagcccggcctgcataggccgggctttttcatgcctgg                                                                                                                                                  <  2:663752‑M1/2‑1 (MQ=255)  tgaattcgttggccgcgtgctgcagaccctgcaacaagaatggcccgctgcccgcgagcagcaggcagtcaaggtgatcgaaccgctgaattgagggttcgcacccttaccagagcccggcctgcataggccgggctttttcatgcctgg                                                                                                                                                  <  1:818665‑M1/2‑1 (MQ=255)     gcgcCTGGGGGCGACGCAGCTGTTTCTGGGGTTGTACGCCGGGGATGGGCGGGCGTTGCTGGAAGAGTATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGgcgc                                                                                                                                               <  2:748590/150‑1 (MQ=255)           gggggCGACGCAGCTGTTTCTGGGGTTGTACGCCGGGGATGGGCGGGCGTTGCTGGAAGAGTATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGcc                                                                                                                                         <  1:218376/150‑1 (MQ=255)               gCGACGCAGCTGTTTCTGGGGTTGTACGCCGGGGATGGGCGGGCGTTGCTGGAAGAGTATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTg                                                                                                                                     >  1:460688/1‑150 (MQ=255)                      aGCTGTTTCTGGGGTTGTACGCCGGGGATGGGCGGGCGTTGCTGGAAGAGTATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGaaa                                                                                                                              <  2:731893/150‑1 (MQ=255)                         tGTTTCTGGGGTTGTACGCCGGGGATGGGCGGGCGTTGCTGGAAGAGTATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAAccc                                                                                                                           <  1:754416/150‑1 (MQ=255)                           tttCTGGGGTTGTACGCCGGGGATGGGCGGGCGTTGCTGGAAGAGTATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCTGAAACCCGt                                                                                                                         <  2:460688/150‑1 (MQ=255)                               tGGGGTTGTACGCCGGGGATGGGCGGGCGTTGCTGGAAGAGTATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGc                                                                                                                     >  1:368080/1‑150 (MQ=255)                               tGGGGTTGTACGCCGGGGATGGGCGGGCGTTGCTGGAAGAGTATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGc                                                                                                                     >  1:561097/1‑150 (MQ=255)                                             cccgctgcccgcgagcagcaggcagtcaaggtgatcgaaccgctgaattgagggttcgcacccttaccagagcccggcctgcataggccgggctttttcatgcctGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCa                                                                                                       >  2:818665‑M1/106‑150 (MQ=255)                                                   gggcgggcGTTGCTGGAAGAGTATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGaaaa                                                                                                 >  2:374169/1‑150 (MQ=255)                                                        ggcgTTGCTGGAAGAGTATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGccc                                                                                            <  1:758412/150‑1 (MQ=255)                                                         gcgTTGCTGGAAGAGTATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCACCAGGCGCCTTGCCTCTGCCGGAAAc                                                                                                                             >  2:542778/1‑116 (MQ=255)                                                         gcgTTGCTGGAAGAGTATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCACCAGGCGCCTTGCCTCTGCCGGAAAc                                                                                                                             <  1:542778/116‑1 (MQ=255)                                                                        tATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCgg                                                                            >  1:196431/1‑150 (MQ=255)                                                                           tACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGct                                                                         >  2:830362/1‑150 (MQ=255)                                                                                     cgctgaattgagggttcgcacccttaccagagcccggcctgcataggccgggctttttcatgcctGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAg                                                                                                          >  2:716482‑M1/66‑107 (MQ=255)                                                                                     cgctgaattgagggttcgcacccttaccagagcccggcctgcataggccgggctttttcatgcctGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAg                                                                                                          <  1:716482‑M1/42‑1 (MQ=255)                                                                                           gCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGaa                                                         <  2:368080/150‑1 (MQ=255)                                                                                            ttgagggttcgcacccttaccagagcccggcctgcataggccgggctttttcatgcctGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCa                                                                                                           <  2:258518‑M1/41‑1 (MQ=255)                                                                                            ttgagggttcgcacccttaccagagcccggcctgcataggccgggctttttcatgcctGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCa                                                                                                           >  1:258518‑M1/59‑99 (MQ=255)                                                                                             gagaCCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCa                                                                                                                    <  1:587136/89‑1 (MQ=255)                                                                                             gagaCCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCa                                                                                                                    >  2:587136/1‑89 (MQ=255)                                                                                               gaCCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTAt                                                                                     >  1:547504/1‑118 (MQ=255)                                                                                               gaCCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTAt                                                                                     <  2:547504/118‑1 (MQ=255)                                                                                                        ccGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGc                                                                                         >  2:286299/1‑105 (MQ=255)                                                                                                        ccGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGc                                                                                         <  1:286299/105‑1 (MQ=255)                                                                                                        ccGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCATCTGCCGGAAACCCGTCTGCAGCGGCCCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGCCCTCTCGTAGGGTTGCGAACCCTCAATTCAGc                                            >  2:199993/1‑150 (MQ=255)                                                                                                        ccGTGCGCTGGTGTGGGGTGTCGACAGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGc                                            >  1:663752/1‑150 (MQ=255)                                                                                                                                                 cAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCCGCTGCCCGCGAGCAGCagg   <  1:374169/150‑1 (MQ=255)                                                                                                                                                  aaCAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCGGGc  >  1:533624/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                  TGTCGCGCCTGGGGGCGACGCAGCTGTTTCTGGGGTTGTACGCCGGGGATGGGCGGGCGTTGCTGGAAGAGTATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCGGGC  >  NC_002947/3276145‑3276439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.