New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3276294 =	22 (0.690)	5 (0.170)	5/236	NT	21.8%	coding (265/312 nt)	PP_2874	hypothetical protein
	?	NC_002947	3276334 =	15 (0.500)					coding (305/312 nt)	PP_2874	hypothetical protein

GGGGATGGGCGGGCGTTGCTGGAAGAGTATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCGGGCCATTCTTGTTGCAGGGTCTGCAGCACGCGGCCAACGAATTCAG  >  NC_002947/3276189‑3276482                                                                                                                                                  |                                                                                                                                                     cccgctgcccgcgagcagcaggcagtcaaggtgatcgaaccgctgaattgagggttcgcacccttaccagagcccggcctgcataggccgggctttttcatgcctGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCa                                                                                                                                                  >  2:818665‑M1/106‑150 (MQ=255)       gggcgggcGTTGCTGGAAGAGTATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGaaaa                                                                                                                                            >  2:374169/1‑150 (MQ=255)            ggcgTTGCTGGAAGAGTATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGccc                                                                                                                                       <  1:758412/150‑1 (MQ=255)                            tATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCgg                                                                                                                       >  1:196431/1‑150 (MQ=255)                               tACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGct                                                                                                                    >  2:830362/1‑150 (MQ=255)                                         cgctgaattgagggttcgcacccttaccagagcccggcctgcataggccgggctttttcatgcctGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAg                                                                                                                                                     >  2:716482‑M1/66‑107 (MQ=255)                                         cgctgaattgagggttcgcacccttaccagagcccggcctgcataggccgggctttttcatgcctGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAg                                                                                                                                                     <  1:716482‑M1/42‑1 (MQ=255)                                               gCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGaa                                                                                                    <  2:368080/150‑1 (MQ=255)                                                ttgagggttcgcacccttaccagagcccggcctgcataggccgggctttttcatgcctGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCa                                                                                                                                                      >  1:258518‑M1/59‑99 (MQ=255)                                                ttgagggttcgcacccttaccagagcccggcctgcataggccgggctttttcatgcctGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCa                                                                                                                                                      <  2:258518‑M1/41‑1 (MQ=255)                                                   gaCCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTAt                                                                                                                                >  1:547504/1‑118 (MQ=255)                                                   gaCCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTAt                                                                                                                                <  2:547504/118‑1 (MQ=255)                                                            ccGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGc                                                                                                                                    <  1:286299/105‑1 (MQ=255)                                                            ccGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGc                                                                                                                                    >  2:286299/1‑105 (MQ=255)                                                            ccGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCATCTGCCGGAAACCCGTCTGCAGCGGCCCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGCCCTCTCGTAGGGTTGCGAACCCTCAATTCAGc                                                                                       >  2:199993/1‑150 (MQ=255)                                                            ccGTGCGCTGGTGTGGGGTGTCGACAGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGc                                                                                       >  1:663752/1‑150 (MQ=255)                                                                                                     tgcctggcgccgctgcagacgggtttccggcagaggcaaggcgccAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCggg                                              >  2:818665‑M2/46‑150 (MQ=255)                                                                                                     cAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCCGCTGCCCGCGAGCAGCagg                                              <  1:374169/150‑1 (MQ=255)                                                                                                      aaCAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCGGGc                                             >  1:533624/1‑150 (MQ=255)                                                                                                        ctggcgccgctgcagacgggtttccggcagaggcaaggcgccAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCg                                                                                      <  1:716482‑M2/65‑1 (MQ=255)                                                                                                        ctggcgccgctgcagacgggtttccggcagaggcaaggcgccAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCg                                                                                      >  2:716482‑M2/43‑107 (MQ=255)                                                                                                         tggcgccgctgcagacgggtttccggcagaggcaaggcgccAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCaa                                                                                             >  1:258518‑M2/42‑99 (MQ=255)                                                                                                         tggcgccgctgcagacgggtttccggcagaggcaaggcgccAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCaa                                                                                             <  2:258518‑M2/58‑1 (MQ=255)                                                                                                               CTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCaa                                                                                             <  2:66587‑M1/93‑1 (MQ=255)                                                                                                               CTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCaa                                                                                             >  1:66587‑M1/1‑93 (MQ=255)                                                                                                               CTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGACTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCGGGCCATTCTTGt                                    >  1:704677‑M1/1‑150 (MQ=255)                                                                                                                     tctGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCGGGCCATTCTTGTTGCAgg                              >  2:728091/1‑150 (MQ=255)                                                                                                                     tctGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCGGGCCATTCTTGTTGCAgg                              >  1:200494/1‑150 (MQ=255)                                                                                                                                        cAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCGGGCCATTCTTGTTGCAGGGTCTGCAGCACGCGGCCaa           <  1:728091/150‑1 (MQ=255)                                                                                                                                                ccAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCGGGCCATTCTTGTTGCAGGGTCTGCAGCACGCGGCCAACGAATTCa   <  1:818665‑M2/148‑1 (MQ=255)                                                                                                                                                ccAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCGGGCCATTCTTGTTGCAGGGTCTGCAGCACGCGGCCAACGAATTCa   <  2:663752‑M2/148‑1 (MQ=255)                                                                                                                                                ccAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGAGGGCCATTCTTGTTGCAGGGTCTGCAGCACGCGGCCAACGAATTCa   <  1:199993‑M2/148‑1 (MQ=255)                                                                                                                                                 cAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCGGGCCATTCTTGTTGCAGGGTCTGCAGCACGCGGCCAACGAATTCAg  >  1:699625‑M2/2‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GGGGATGGGCGGGCGTTGCTGGAAGAGTATTACCCCGCGCTGCCGGGCGAGACCATGACCCGTGCGCTGGTGTGGGGTGTCGACCGCGCCCGGGCGATGGCAACAGGCGCCTTGCCTCTGCCGGAAACCCGTCTGCAGCGGCGCCAGGCATGAAAAAGCCCGGCCTATGCAGGCCGGGCTCTGGTAAGGGTGCGAACCCTCAATTCAGCGGTTCGATCACCTTGACTGCCTGCTGCTCGCGGGCAGCGGGCCATTCTTGTTGCAGGGTCTGCAGCACGCGGCCAACGAATTCAG  >  NC_002947/3276189‑3276482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.