New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3374002 =	29 (0.920)	3 (0.100)	3/240	NT	9.1%	coding (245/300 nt)	PP_2972	hypothetical protein
	?	NC_002947	3374043 =	32 (1.040)					coding (286/300 nt)	PP_2972	hypothetical protein

CCTGCCAGCGAGTATCTAGTGGCATAAATAATGCGGGTAAAGCCACTGCGGCCTTTCAACGAGAGGGCATCCAATTCGTCGCTCTGTGGCATGTTGCTCATGGCTGCAACACTCCAGCAGGGTCGTTCAGCGCTTGCTGATAGGCCTGGTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3374154‑3374002 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggaGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATACTCGCTGGCAGGCTTGCGGGCAGCGTTTCAAGGCGAAGCCGCTTTCAG  >  NC_002947/3374043‑3374190                                                                                                                                                                                                                                                                                                               CCTGCCAGCGAGTATCTAGTGGCATAAATAATGCGGGTAAAGCCACTGCGGCCTTTCAACGAGAGGGCATCCAATTCGTCGCTCTGTGGCATGTTGCTCATGGCTGCAACACTCCAGCAGGGTCGTTCAGCGCTTGCTGATAGGCCTGGT                                                                                                                                                         >  2:163158/1‑150                                                                                                         TGCAACACTCCAGCAGGGTCGTTCAGCGCTTGCTGATAGGCCTGGTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAA                                                                                           >  1:839664/1‑108                                                                                                         TGCAACACTCCAGCAGGGTCGTTCAGCGCTTGCTGATAGGCCTGGTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAA                                                                                           <  2:839664/108‑1                                                                                                                  CCAGCAGGGTCGTTCAGCGCTTGCTGATAGGCCTGGTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATACTCGCTGGCA                                        >  2:804719/1‑150                                                                                                                                                      TGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTA                                                      <  1:137748/100‑1                                                                                                                                                      TGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTA                                                      >  2:137748/1‑100                                                                                                                                                       GGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATACTCGCTGGCAGGCTTGCGGGCAGCGTTTCAATGCGAAGCCGCTTTCA   <  2:479906/150‑1                                                                                                                                                        GAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATACTCGCTGGCAGGCTTGCGGGCAGCGTTTCAAGGCGAAGCCGCTTTCAG  <  2:123075/150‑1                                                                                                                                                                                                                                                                                                               CCTGCCAGCGAGTATCTAGTGGCATAAATAATGCGGGTAAAGCCACTGCGGCCTTTCAACGAGAGGGCATCCAATTCGTCGCTCTGTGGCATGTTGCTCATGGCTGCAACACTCCAGCAGGGTCGTTCAGCGCTTGCTGATAGGCCTGGTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3374154‑3374002 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggaGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATACTCGCTGGCAGGCTTGCGGGCAGCGTTTCAAGGCGAAGCCGCTTTCAG  >  NC_002947/3374043‑3374190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.