New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3374002 =	29 (0.920)	3 (0.100)	3/240	NT	9.1%	coding (245/300 nt)	PP_2972	hypothetical protein
	?	NC_002947	3374043 =	32 (1.040)					coding (286/300 nt)	PP_2972	hypothetical protein

CGTCTTGATGGCAGTGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATACTCGCTGGCAGGCTTGCGGGCAGCGTTTCAAGGCGAAGCCGCTTTCAG  >  NC_002947/3373896‑3374190                                                                                                                                                    |                                                                                                                                                    cGTCTTGATGGCAGTCCGCTTCTTCATGGCTGGTCTCATAGAACGAACTCCCGACAACGCAATTTTACCAATCCCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTCTCCACCAGGCCTATCAGCAAGCGCTGAACGGCCCTGCTGGAgtg                                                                                                                                                   <  1:687765/150‑1 (MQ=255)      tGATGGCAGTGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCa                                                                                                                                              <  1:606231/150‑1 (MQ=255)            cAGTGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATg                                                                                                                                        >  1:305488/1‑150 (MQ=255)               tGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGc                                                                                                                                     <  2:772216/150‑1 (MQ=255)                  gcTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAAc                                                                                                                                  >  2:389717/1‑150 (MQ=255)                   cttcttCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACa                                                                                                                                 <  2:305488/150‑1 (MQ=255)                        tcATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCca                                                                                                                            <  2:694905/150‑1 (MQ=255)                                      agagAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCGACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGAAGCCATGAGCAACATGCCACAGAGCGACGAAtt                                                                                                              >  1:221427/1‑150 (MQ=255)                                             gAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGcc                                                                                                       >  1:479906/1‑150 (MQ=255)                                                tttcaacgagagggcatccaattcgtcgctctgtggcatgttgctcatggctgcaacacTCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCa                                                                                                                                              >  1:839664‑M1/60‑108 (MQ=255)                                                tttcaacgagagggcatccaattcgtcgctctgtggcatgttgctcatggctgcaacacTCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCa                                                                                                                                              <  2:839664‑M1/49‑1 (MQ=255)                                                   aGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCg                                                                                                 >  2:418793/1‑150 (MQ=255)                                                    ggACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGt                                                                                                <  1:418793/150‑1 (MQ=255)                                                           gCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGaa                                                                                            >  2:643568/1‑147 (MQ=255)                                                           gCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGaa                                                                                            <  1:643568/147‑1 (MQ=255)                                                           gCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAgg                                                                                         >  1:608205/1‑150 (MQ=255)                                                                     cAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGc                                                                               <  1:389717/150‑1 (MQ=255)                                                                     cAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGc                                                                               >  2:278891/1‑150 (MQ=255)                                                                      aaTCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCt                                                                              >  1:163158/1‑150 (MQ=255)                                                                        tCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCttt                                                                            >  1:123075/1‑150 (MQ=255)                                                                          gCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTAc                                                                          <  2:342894/150‑1 (MQ=255)                                                                                                   tgcaacactccagcagggtcgttcagcgcttgctgataggcctggtggaGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGaaa                                                                                           <  2:839664‑M2/59‑1 (MQ=255)                                                                                                   tgcaacactccagcagggtcgttcagcgcttgctgataggcctggtggaGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGaaa                                                                                           >  1:839664‑M2/50‑108 (MQ=255)                                                                                                    tgccctATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTAGGCCACTAGATACt                                                >  1:601006/6‑150 (MQ=255)                                                                                                      cTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCg                                                                                      >  1:160487/1‑110 (MQ=255)                                                                                                      cTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCg                                                                                      <  2:160487/110‑1 (MQ=255)                                                                                                      cTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGc                                                           <  1:640403/137‑1 (MQ=255)                                                                                                      cTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGc                                                           >  2:640403/1‑137 (MQ=255)                                                                                                            ccagcagggtcgttcagcgcttgctgataggcctggtggaGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATACTCGCTGGCa                                        >  2:804719‑M2/41‑150 (MQ=255)                                                                                                              ACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATACTCGCTGGCAgg                                      >  2:163158‑M1/1‑150 (MQ=255)                                                                                                               ccaGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACGGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATACTCGCTGGCAGGc                                     >  2:307318/1‑150 (MQ=255)                                                                                                                     cTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATACTCGCTGGCAGGCTTGCgg                               <  1:278891/150‑1 (MQ=255)                                                                                                                      tATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCTACTAGATACTCGCTGGCAGGCTTGCggg                              >  1:641955/1‑150 (MQ=255)                                                                                                                        tCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATAc                                                 <  2:263972/129‑1 (MQ=255)                                                                                                                        tCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATAc                                                 >  1:263972/1‑129 (MQ=255)                                                                                                                         tatcAATCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATACTCGCTGGCAGGCTTGCGGGCAg                           <  2:641955/147‑1 (MQ=255)                                                                                                                             aaGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATg                                                                                                                               >  2:365346/1‑46 (MQ=255)                                                                                                                             aaGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATg                                                                                                                               <  1:365346/46‑1 (MQ=255)                                                                                                                                  cTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACGGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATACTCGCTGGCAGGCTTGCGGGCAGCGTTTCAAg                  <  1:307318/150‑1 (MQ=255)                                                                                                                                           ccTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATACTCGCTGGCAGGCTTGCGGGCAGCGTTTCAAg                  >  2:139609/1‑141 (MQ=255)                                                                                                                                           ccTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATACTCGCTGGCAGGCTTGCGGGCAGCGTTTCAAg                  <  1:139609/141‑1 (MQ=255)                                                                                                                                                tggaGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTa                                                      <  1:137748‑M2/96‑1 (MQ=255)                                                                                                                                                tggaGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTa                                                      >  2:137748‑M2/5‑100 (MQ=255)                                                                                                                                                 ggaGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATACTCGCTGGCAGGCTTGCGGGCAGCGTTTCAATGCGAAGCCGCTTTCa   <  2:479906‑M2/147‑1 (MQ=255)                                                                                                                                                  gaGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATACTCGCTGGCAGGCTTGCGGGCAGCGTTTCAAGGCGAAGCCGCTTTCAg  <  2:123075‑M2/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CGTCTTGATGGCAGTGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATACTCGCTGGCAGGCTTGCGGGCAGCGTTTCAAGGCGAAGCCGCTTTCAG  >  NC_002947/3373896‑3374190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.