New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3374002 =	29 (0.920)	3 (0.100)	3/240	NT	9.1%	coding (245/300 nt)	PP_2972	hypothetical protein
	?	NC_002947	3374043 =	32 (1.040)					coding (286/300 nt)	PP_2972	hypothetical protein

CGTGTCGATCTTCTTCCGATGATGTTCGTCAGCGAACAGGTCCGTCTTGATGGCAGTGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATACT  >  NC_002947/3373854‑3374144                                                                                                                                                     |                                                                                                                                               ctgaaagcggcttcgccttgaaacgctgcccgcaagcctgccagcgagtatctagtggcataaataatgcgggtaaagccactgcggcctttcaacgagagggcatccaattcgtcgctctgtggcatgttgctcatggctgcaacacTc                                                                                                                                               <  2:123075‑M1/2‑1 (MQ=255) cGTGTCGATCTTCTTCCGATGATGTTCGTCAGCGAACAGGTCCGTCTTGATGGCAGTGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATc                                                                                                                                               <  2:699305/150‑1 (MQ=255)  tgaaagcggcttcgcattgaaacgctgcccgcaagcctgccagcgagtatctagtggcataaataatgcgggtaaagccactgcggcctttcaacgagagggcatccaattcgtcgctctgtggcatgttgctcatggctgcaacacTcc                                                                                                                                              <  2:479906‑M1/3‑1 (MQ=255)       gATCTTCTTCCGATGATGTTCGTCAGCGAACAGGTCCGACTTGATGGCAGTGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAg                                                                                                                                         >  2:492749/1‑150 (MQ=255)              ttcCGATGATGTTCGTCAGCGAACAGGTCCGTCTTGATGGCAGTGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATcc                                                                                                                                              >  2:848597/1‑138 (MQ=255)              ttcCGATGATGTTCGTCAGCGAACAGGTCCGTCTTGATGGCAGTGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATcc                                                                                                                                              <  1:848597/138‑1 (MQ=255)                           cGTCAGCGAACAGGTCCGTCTTGATGGCAGTGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGTCCTATCCGCAAGCGCTGaa                                                                                                                     <  2:269925/150‑1 (MQ=255)                                gCGAACAGGTCCGTCTTGATGGCAGTGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGAcc                                                                                                                <  1:718331/150‑1 (MQ=255)                                     cAGGTCCGTCTTGATGGCAGTGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCctgct                                                                                                           <  1:492749/150‑1 (MQ=255)                                      aGGTCCGTCTTGATGGCAGTGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCctgctg                                                                                                          <  2:637114/150‑1 (MQ=255)                                       tgccagcgagtatctagtggcataaataatgcgggtaaagccactgcggcctttcaacgagagggcatccaattcgtcgctctgtggcatgttgctcatggctgcaacacTCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTgg                                                                                                         >  2:804719‑M1/111‑150 (MQ=255)                                        ttCCGTCTTGATGGCAGTGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGa                                                                                                        <  2:519230/149‑1 (MQ=255)                                           cGTCTTGATGGCAGTCCGCTTCTTCATGGCTGGTCTCATAGAACGAACTCCCGACAACGCAATTTTACCAATCCCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTCTCCACCAGGCCTATCAGCAAGCGCTGAACGGCCCTGCTGGAgtg                                                                                                     <  1:687765/150‑1 (MQ=255)                                                tGATGGCAGTGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCa                                                                                                <  1:606231/150‑1 (MQ=255)                                                     tagtggcataaataatgcgggtaaagccactgcggcctttcaacgagagggcatccaattcgtcgctctgtggcatgttgctcatggctgcaacacTcca                                                                                                                                             >  2:137748‑M1/97‑100 (MQ=255)                                                     tagtggcataaataatgcgggtaaagccactgcggcctttcaacgagagggcatccaattcgtcgctctgtggcatgttgctcatggctgcaacacTcca                                                                                                                                             <  1:137748‑M1/4‑1 (MQ=255)                                                      cAGTGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATg                                                                                          >  1:305488/1‑150 (MQ=255)                                                         tGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCctgctg                                                                                                          <  2:426616/131‑1 (MQ=255)                                                         tGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCctgctg                                                                                                          >  1:426616/1‑131 (MQ=255)                                                         tGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGc                                                                                       <  2:772216/150‑1 (MQ=255)                                                            gcTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAAc                                                                                    >  2:389717/1‑150 (MQ=255)                                                             cttcttCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACa                                                                                   <  2:305488/150‑1 (MQ=255)                                                                 ttcATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGc                                                                                                                                       <  2:156021/94‑1 (MQ=255)                                                                 ttcATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGc                                                                                                                                       >  1:156021/1‑94 (MQ=255)                                                                  tcATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCca                                                                              <  2:694905/150‑1 (MQ=255)                                                                                agagAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCGACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGAAGCCATGAGCAACATGCCACAGAGCGACGAAtt                                                                >  1:221427/1‑150 (MQ=255)                                                                                       gAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGcc                                                         >  1:479906/1‑150 (MQ=255)                                                                                          tttcaacgagagggcatccaattcgtcgctctgtggcatgttgctcatggctgcaacacTCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCa                                                                                                <  2:839664‑M1/49‑1 (MQ=255)                                                                                          tttcaacgagagggcatccaattcgtcgctctgtggcatgttgctcatggctgcaacacTCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCa                                                                                                >  1:839664‑M1/60‑108 (MQ=255)                                                                                             aGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCg                                                   >  2:418793/1‑150 (MQ=255)                                                                                              ggACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGt                                                  <  1:418793/150‑1 (MQ=255)                                                                                                     gCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGaa                                              <  1:643568/147‑1 (MQ=255)                                                                                                     gCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGaa                                              >  2:643568/1‑147 (MQ=255)                                                                                                     gCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAgg                                           >  1:608205/1‑150 (MQ=255)                                                                                                               cAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGc                                 <  1:389717/150‑1 (MQ=255)                                                                                                               cAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGc                                 >  2:278891/1‑150 (MQ=255)                                                                                                                aaTCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCt                                >  1:163158/1‑150 (MQ=255)                                                                                                                  tCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCttt                              >  1:123075/1‑150 (MQ=255)                                                                                                                    gCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTAc                            <  2:342894/150‑1 (MQ=255)                                                                                                                                              tgccctATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTAGGCCACTAGATACt  >  1:601006/6‑150 (MQ=255)                                                                                                                                                cTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCg                                        >  1:160487/1‑110 (MQ=255)                                                                                                                                                cTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCg                                        <  2:160487/110‑1 (MQ=255)                                                                                                                                                cTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGc             >  2:640403/1‑137 (MQ=255)                                                                                                                                                cTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGc             <  1:640403/137‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               CGTGTCGATCTTCTTCCGATGATGTTCGTCAGCGAACAGGTCCGTCTTGATGGCAGTGCGCTTCTTCATGGCTGGTGTCAGAGAACGAAATCAGGACAACGCAATTTTACCAATCGCAGGGGGCCGAGGTTTTTCGAGGTGCCCTTTATCCACCAGGCCTATCAGCAAGCGCTGAACGACCCTGCTGGAGTGTTGCAGCCATGAGCAACATGCCACAGAGCGACGAATTGGATGCCCTCTCGTTGAAAGGCCGCAGTGGCTTTACCCGCATTATTTATGCCACTAGATACT  >  NC_002947/3373854‑3374144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.