New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3417655 =	24 (0.760)	3 (0.100)	3/244	NT	11.0%	coding (429/804 nt)	PP_3030	hypothetical protein
	?	NC_002947	3417679 =	25 (0.800)					coding (405/804 nt)	PP_3030	hypothetical protein

AAAAAGTCTCTGCTGCGAAGCAGCAGGCATTATTCCCCCCATCAGCAGCCCCGCCGAGGCACTGATACCCCACAACAAGCTGCGCGAGGCACCGCCCGCTGATGCAACGCTAATCGCTAAAAGTCGCCCGCACGCGCAGCCTGC‑CGTGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3417805‑3417655 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggGCGACTTTTAGCGATTAGCGTTGCAT  >  NC_002947/3417679‑3417704                                                                                                                                                                                    AAAAAGTCTCTGCTGCGAAGCAGCAGGCATTATTCCCCCCATCAGCAGCCCCGCCGAGGCACTGATACCCCACAACAAGCTGCGCGAGGCACCGCCCGCTGATGCAACGCTAATCGCTAAAAGTCGCCCGCACGCGCAGCCTGC‑CGTGGG                             <  1:439823/150‑1 AAAAAGTCTCTGCTGCGAAGCAGCAGGCATTATTCCCCCCATCAGCAGCCCCGCCGAGGCACTGATACCCCACAACAAGCTGCGCGAGGCACCGCCCGCTGATGCAACGCTAATCGCTAAAAGTCGCCCGCACGCGCAGCCTGC‑CGTGGG                             <  2:301390/150‑1                        CAGGCATTATTCCCCCCATCAGCAGCCCCGCCGAGGCACTGATACCCCACAACAAGCTGCGCGAGGCACCGCCCGCTGATGCAACGCTAATCGCTAAAAGTCGCCCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTT      <  1:720193/150‑1                                    CCCCCATCAGCAGCCCCGCCGAGGCACTGATACCCCACAACAAGCTGCGCGAGGCACCGCCCGCTGATGCAACGCTAATCGCTAAAAGTCGCCCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCAT  <  1:614501/142‑1                                    CCCCCATCAGCAGCCCCGCCGAGGCACTGATACCCCACAACAAGCTGCGCGAGGCACCGCCCGCTGATGCAACGCTAATCGCTAAAAGTCGCCCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCAT  >  2:614501/1‑142                                                                                                                                                                                    AAAAAGTCTCTGCTGCGAAGCAGCAGGCATTATTCCCCCCATCAGCAGCCCCGCCGAGGCACTGATACCCCACAACAAGCTGCGCGAGGCACCGCCCGCTGATGCAACGCTAATCGCTAAAAGTCGCCCGCACGCGCAGCCTGC‑CGTGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3417805‑3417655 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggGCGACTTTTAGCGATTAGCGTTGCAT  >  NC_002947/3417679‑3417704

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.